LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g06016	ATGATGAATATTAGTAAAATTGCTCTTCTCGGAAACCGATTAACGGGTTCAATACCAGCTGAGATTTCAAACATATCTACTCTCCAAACCTTGGAGTTATGGAACAATCAGTTGTCAGGAAATCTTCCTCCTGAACTTGGGTATCTAACCCAAATTAAAACACTGCGACTTTCCTCTAACAATTTTACCGGAGAGCTACCTATGACATTCGTCAAGCTCACTACATTACAAGATTTCCGAATTGAGGACAATCAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGACAAGTATTAATGCGCTAATGATTCAAGGAAGTGGATTAAGTGGGCCTATTCCTTCTGGAATTTCACTTTTGAGAAACTTAACTGACTTGAGAATTTGTGATTTGGATGGATATGAAGATGCACCTTTGCCACAACTTAATAGTATGACAAATTTAAATACTCTGGTTCTAAGGAACTGCAACATCAGTGGAGAACTGCCTGGTTATCTTGGGACTATGACATTATTAAAACACTTGGACCTCAGCTTTAACAAGTTAAGTGGAATAATTCCAGATTCCTATGCTAACATGAAGAGTTCGAATTACATATTTTTAACTGGAAATCTTCTCACTGGCCCCGTGCGTCGTTGGAGACATTATGTTGACACAGATCTCTCATACAATAATTTCAGCATCAGCCAAGTGAGTCAAAGATGTCAAGATGACAATGTGAACTTGTTTTCTACCTCATGGGCACACAATGACATAGAAACAGTTTCGTGTTTGAGATTTGAATGTCCCAAACCCTCATACTCCCTTTATATAAATTGTGGCGGAAAGCATGCAACAGTCAACAAAACAAGTTATGACGAAGATTCAGACTTATCTAGCCCAGCTAGATTCCATGTCAGTTCAAATGGAAATTGGGCATTTAGCACCACTGGTGAATTCTTAGATAGTCATGATCTCCGTGAAAATTATTCCCCTAAAAATATAGCTAAACTTACTATGGTGGATGCTGAATTGTACATGAATGCACGTGTTTCTCCTATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAATGGAAACTACACAGTAAATCTACATTTTGCTGAAATAATGTTCACAGAAGATCAAACTTATGGTAGTCTTGGAAGGCGTGTATTTGATATCTACCTTCAGGGGAAGGCAGTGCAAAAGGACTTCAATATTGCCAAAGAAGCAGGAGGAGTTGGTAAGAAAATCATAAAACAGTTCAAAGATGTTGTTGTTTCTAGTAATACTTTGGAGATCCGTTTATATTGGGCTGGAAAAGGGACACAGTTTGTCCCAAATAAATCAGTATATGGTCCTCTTATATCGGCTATCTCAGTGGAATCTGACTCTCCACCTGGAACTGGAAGCATATCTGCAGGAGCTGTGGCTGGAATTGTGGTTGCAGCAACAATTGTTATCATTCTTGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGTAAAGAAAAACTCATTGGCAAGAGAACTGAAGAGTTTAGACCTACCAACGGGTTTATTTACCCTAAGGCAAATCAAAGCAGCAACAAACAACTTTGATAATTCCAATAAGATTGGAGCAGGAGGATTTGGTCCTGTCTACAAGGGATGTTTATCCAACGGGACACTGATTGCAGTCAAGCAACTTTCTTCTAAATCAAGGCAGGGAAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCATTGCAACACCCTTATCTTGTTAAACTCCATGGTTGCTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGCCTTGCTCGTGCTTTATTTGGTCCAGAGGAAGAACAAATAAAATTAGACTGGTCTATACGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTGACATACCTACATGAAGAGTCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCTACTAATGTGTTGCTTGACAAGGATCTCGACCCTAAGATATCTGATTTTGGTTTGGCCAAACTTGATGAGGAGGATAATACTCACATTAGCACTAGAATTGCAGGGACATATGGATATATGGCTCCTGAATATGCATTGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATCGTTAGTGGAAGGAGCAACACCCTTTATCGGACAAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATATGTTGAAAGAGAGAGGCGACCAAATGGAGCTAGTAGACAGAAGATTAGGTTCAGATTTCAACAAAAAGGAAGCTATGGTGATGATCAATGTGGCTCTCCTATGCACGAATGTCACTTCAAACCTTAGGCCCTCCATGTCGTCGGTGGTAAGTATGCTTGAAGGAAGGATTGTGGTTCCAGAGTTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGATGGAAGCAATGAGGCAGTATTACTATCATACGGAAGAAAATAAGATAAGCAAGTCACCATCACAGATTCAGAGTTTATTAAATGATGGGTCATGGACTGCTACATCTTCATCAGGTGTAGACCTTTATTCTGTCCACCCTGATTCTTCCTATTGGGAGAAAAGAAATTAA	2631	0.3911	MMNISKIALLGNRLTGSIPAEISNISTLQTLELWNNQLSGNLPPELGYLTQIKTLRLSSNNFTGELPMTFVKLTTLQDFRIEDNQFSGKIPDYIQNWTSINALMIQGSGLSGPIPSGISLLRNLTDLRICDLDGYEDAPLPQLNSMTNLNTLVLRNCNISGELPGYLGTMTLLKHLDLSFNKLSGIIPDSYANMKSSNYIFLTGNLLTGPVRRWRHYVDTDLSYNNFSISQVSQRCQDDNVNLFSTSWAHNDIETVSCLRFECPKPSYSLYINCGGKHATVNKTSYDEDSDLSSPARFHVSSNGNWAFSTTGEFLDSHDLRENYSPKNIAKLTMVDAELYMNARVSPISLTYYGFCLANGNYTVNLHFAEIMFTEDQTYGSLGRRVFDIYLQGKAVQKDFNIAKEAGGVGKKIIKQFKDVVVSSNTLEIRLYWAGKGTQFVPNKSVYGPLISAISVESDSPPGTGSISAGAVAGIVVAATIVIILVFGILWWKGCFVKKNSLARELKSLDLPTGLFTLRQIKAATNNFDNSNKIGAGGFGPVYKGCLSNGTLIAVKQLSSKSRQGNREFLNEIGMISALQHPYLVKLHGCCVEGDQLLLIYEYLENNSLARALFGPEEEQIKLDWSIRQKICVGIARGLTYLHEESRLKVVHRDIKATNVLLDKDLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYALHGYLTDKADVYSFGVVALEIVSGRSNTLYRTKEEAFYLLDWAHMLKERGDQMELVDRRLGSDFNKKEAMVMINVALLCTNVTSNLRPSMSSVVSMLEGRIVVPEFVSDSSEVMDEKKMEAMRQYYYHTEENKISKSPSQIQSLLNDGSWTATSSSGVDLYSVHPDSSYWEKRN	876

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g06016	876	SUPERFAMILY	Protein kinase-like (PK-like)	511	816	IPR011009	-
	Vivi2g06016	876	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	650	662	IPR008271	GO:0004672\|GO:0006468
	Vivi2g06016	876	Pfam	Protein tyrosine and serine/threonine kinase	531	799	IPR001245	GO:0004672\|GO:0006468
	Vivi2g06016	876	Gene3D	Ribonuclease Inhibitor	129	251	IPR032675	-
	Vivi2g06016	876	Gene3D	Ribonuclease Inhibitor	1	128	IPR032675	-
	Vivi2g06016	876	Gene3D	-	267	459	-	-
	Vivi2g06016	876	SMART	serkin_6	528	799	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g06016	876	Pfam	Malectin domain	269	454	IPR021720	-
	Vivi2g06016	876	Gene3D	Phosphorylase Kinase; domain 1	495	603	-	-
	Vivi2g06016	876	SUPERFAMILY	L domain-like	4	213	-	-
	Vivi2g06016	876	Gene3D	Transferase(Phosphotransferase) domain 1	604	810	-	-
	Vivi2g06016	876	CDD	STKc_IRAK	534	801	-	-
	Vivi2g06016	876	Pfam	Leucine rich repeat	147	207	IPR001611	GO:0005515
	Vivi2g06016	876	FunFam	Putative LRR receptor-like serine/threonine-protein kinase isoform A	66	133	-	-
	Vivi2g06016	876	ProSiteProfiles	Protein kinase domain profile.	528	809	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g06016	876	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	497	603	-	-
	Vivi2g06016	876	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	604	811	-	-
	Vivi2g06016	876	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	4	832	-	-
	Vivi2g06016	876	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	267	459	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g06016	Vivi-Chr2	191675339	191684201	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g06016	7	845	Receptor kinase-like Gene Family	AT1G53420	57.362	0.0	943

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vivi2g06016		PK_Tyr_Ser-Thr	1.2e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g06016	-		-	gmx:732563	1167.91