Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06012 ATGAACACTTCCTCGCAGTGTCTCTTCCTTTCACTCATTGCCATTTGGCTCATATCTATATCAACTTTTGGAGCTACTACGATTCACCCCGATGAAAAGAAAGCTCTTCAAGATATAGCTAACTCACTTGGTAAGAAGGATTGGAATTTTAACACAGATCCATGCAGCAACTGGGTTACAAAGTTAGAGAACAATGTCACCTGTAACTGCGCTGTAGCTGGTGACAACTTCTGCCATGTTGTTACAATAATTTTGAACAAGCAAAATCTCCCGGGCACTCTCCCACCAGAACTGAACAGGCTGCGTTACCTTCAAATTATTGATCTCTCTCGCAATTACTTGAACGGTACAATTCCTAAAGAATGGGGCTCCATGACGAATCTTCTTAACATTATTCTCTCCGGAAATCGATTAACCGGTTCAATACCAAAGGAGATTGCTAATATATCTACTCTGATACAATTGAACTTGACAGGCAATCAAATGTCTGGAAATATTCCTTCTGAGCTTGGGAGTCTACCCCATATTCAAGCACTGCAACTTTCGTCTAACAATTTTACTCGAGAACTACCCGTAACATTGGCCAAGCTCACTACACTTCTAGATTTCCGAATTTCAGACAACCAGTTGTCCGGAAAGATACCTGATTTTATTCAAAATTGGACAAAAATCAGTACACTAATCATTCAGGGGAGTGGATTAAGTGGGCCGATTCCTTCTGAAATATCACTTTTGAGAAACTTAATTGAATTGAGAATTAGTGATTTGAATGGATCCGAATATGCACCTTTGCCACAACTTAGCAATATGATATCGTTAAACAGACTGGTTATGAGGAATTGCAACATCAATGGAAACCTACCCGAATCTATTGAGAATATGACAGCATTGAAACACTTAGATCTCAGCTTTAACAAATTAAATGGAACGATTCCGGATAGCTATGCTGACATGGACAGTTTGAATTTCGTGTTTTTAACTGGAAACCTTCTCACTGGACAAGTGCCTTCTCCTTGGGGAAAGAATGCATATGTAGATCTTTCATACAATAACTTCACCATCAATCAAGAGAGTCAGATATGTCAAAATGAAAGAGTGAACTTATTTTCTACTTCATGGGCACGCAATGACATAGGAACAAATTCGTGTTTGCGCTTTGAATGTCCCGAACACTTTTACTCCCTTCATATAAATTGTGGGGGAAATCAAGAAAAAGTCAACGGAACAAATTATGAAGATGATCAAGATTCATCTGGACCTGCCAGATTCGATGGCAAGGACAGTCCAACAGCAAAGTGGGCATTTAGCAGCACTGGCAAATTCATTGATAGTGGAACATTTGGAAACACTTATACTCCGGCAAATATCTCTAAACTTACTATGGTGGATGCTGAGTTGTACATGACTGCACGTGTTTCTCCTATTTCATTGACTTATTATGGGTTTTGCCTCGCAAATGGAAGCTACACAATAAATCTTCATTTTGCTGAAATAATATTCACAGACAATCAAACTTATGGTAGTCTTGGAAGGCGTGTATTTGATATCTATCTTCAGGGAATGCGCGTGCAAAAAGACTTCAATATTGCCGAAGAAGCTGGGGGAGTTGGTAAGAAAGTCACAAAACAGTTCAAAGATGTTAATGTTTCTAGTAATACTTTGGAGATCCGATTGTATTGGGCTGGAAAAGGGACACAGTATCTCCCAGATAAATCCGTATATGGTCCTCTTATATCAGCTATATCAGTGGAATCTGACTCTCCACCTAGAAGCCCTAGAACCCATAGAAGCAAACCTGCTGGAGCTGTGGTTGGAAGTGTGGTTGCAGCAACAATTATTATCATTCTAGTATTCGGTATACTCTGGCGGAAAGGATGTTTTGGAAAGAAAAACTCTTTAGCAAAAGCAGAGCTGAAGAGTTTAGACCTTCAAACGGATCTATTTACCTTAAGACAAATCAAATCAGCTACAAATAACTTTGATATTTCAAATAAGATTGGAGAAGGAGGATTTGGTCCAGTGTACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTCAAACAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTCTAAATGAGATAGGCATGATTTCTGCTTTGCAACACCCTTATCTTGTTAAACTCTATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTCTTGCCCGTGCTTTATTTGGTCCAGAGGAACACCAAATAAAACTAGATTGGTCAACTAGGAAGAAGATCTGTGTTGGTATTGCTAGTGGTTTGGCATTTCTTCATGAAGAATCAAGACTGAAGGTTGTTCATAGGGACATCAAGGCCACTAATGTGTTGCTTGATAAAGATCTCAAACCAAAGATATCTGATTTTGGTTTAGCCAGGCTTGATGACGAGGACAATACTCACATTAGCACTAGAATTGCGGGGACATATGGTTACATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATCGTTAGTGGAAGGAGCAACACCCTTTATCGGTCACAGGAGGAAACATTCTATCTTCTTGATTGGGCACATTTGATGAAAGAGAAAGGTGACTTAATGGAGCTAGTTGATAGAAGATTAGGATCAGATTTCAACAAAAAGGAAGCTATGGTGATGATCAATGTGGCTCTCCTATGCACGAATGCCACGTCAAACCTTAGGCCCTCCATGTCGTCTGTGGTAAGTATGCTCAAAGGTAGGACCGTGGTTCCAGAATTCGTTGCAGATTCAAGTGAAGTAATGGATGAAAAGAAATTTGAAATAATGAGGAAATATTATTATCAGATTGAAGAAAATGAGATAAGTAAGTCACAAACACAAAGTCAGAGTTTATCAATTGATGGGCCTTGGACGGCTGCATCTTCATCGGCTGTAGACCTTTATCCAGTCCACCTTGATTCGTCCTATTGGGAGGAAAGAAATTAA 3027 0.3941 MNTSSQCLFLSLIAIWLISISTFGATTIHPDEKKALQDIANSLGKKDWNFNTDPCSNWVTKLENNVTCNCAVAGDNFCHVVTIILNKQNLPGTLPPELNRLRYLQIIDLSRNYLNGTIPKEWGSMTNLLNIILSGNRLTGSIPKEIANISTLIQLNLTGNQMSGNIPSELGSLPHIQALQLSSNNFTRELPVTLAKLTTLLDFRISDNQLSGKIPDFIQNWTKISTLIIQGSGLSGPIPSEISLLRNLIELRISDLNGSEYAPLPQLSNMISLNRLVMRNCNINGNLPESIENMTALKHLDLSFNKLNGTIPDSYADMDSLNFVFLTGNLLTGQVPSPWGKNAYVDLSYNNFTINQESQICQNERVNLFSTSWARNDIGTNSCLRFECPEHFYSLHINCGGNQEKVNGTNYEDDQDSSGPARFDGKDSPTAKWAFSSTGKFIDSGTFGNTYTPANISKLTMVDAELYMTARVSPISLTYYGFCLANGSYTINLHFAEIIFTDNQTYGSLGRRVFDIYLQGMRVQKDFNIAEEAGGVGKKVTKQFKDVNVSSNTLEIRLYWAGKGTQYLPDKSVYGPLISAISVESDSPPRSPRTHRSKPAGAVVGSVVAATIIIILVFGILWRKGCFGKKNSLAKAELKSLDLQTDLFTLRQIKSATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLDWSTRKKICVGIASGLAFLHEESRLKVVHRDIKATNVLLDKDLKPKISDFGLARLDDEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVSGRSNTLYRSQEETFYLLDWAHLMKEKGDLMELVDRRLGSDFNKKEAMVMINVALLCTNATSNLRPSMSSVVSMLKGRTVVPEFVADSSEVMDEKKFEIMRKYYYQIEENEISKSQTQSQSLSIDGPWTAASSSAVDLYPVHLDSSYWEERN 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06012 1008 SMART serkin_6 660 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06012 1008 Pfam Malectin domain 394 581 IPR021720 -
Vivi2g06012 1008 MobiDBLite consensus disorder prediction 408 427 - -
Vivi2g06012 1008 CDD STKc_IRAK 666 933 - -
Vivi2g06012 1008 Gene3D Phosphorylase Kinase; domain 1 626 735 - -
Vivi2g06012 1008 Pfam Protein tyrosine and serine/threonine kinase 662 931 IPR001245 GO:0004672|GO:0006468
Vivi2g06012 1008 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 970 - -
Vivi2g06012 1008 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 629 735 - -
Vivi2g06012 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase 736 943 - -
Vivi2g06012 1008 Gene3D Ribonuclease Inhibitor 31 151 IPR032675 -
Vivi2g06012 1008 Gene3D Transferase(Phosphotransferase) domain 1 736 944 - -
Vivi2g06012 1008 ProSiteProfiles Protein kinase domain profile. 660 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06012 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Vivi2g06012 1008 SUPERFAMILY Protein kinase-like (PK-like) 644 942 IPR011009 -
Vivi2g06012 1008 Gene3D Ribonuclease Inhibitor 153 261 IPR032675 -
Vivi2g06012 1008 Gene3D Ribonuclease Inhibitor 262 383 IPR032675 -
Vivi2g06012 1008 Gene3D - 392 586 - -
Vivi2g06012 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 192 257 - -
Vivi2g06012 1008 FunFam Leucine-rich repeat receptor protein kinase EMS1 94 191 - -
Vivi2g06012 1008 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 392 586 - -
Vivi2g06012 1008 SUPERFAMILY L domain-like 75 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06012 Vivi-Chr2 191643151 191661432 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06012 25 977 Receptor kinase-like Gene Family AT1G53420 54.479 0.0 996
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi2g06012 PK_Tyr_Ser-Thr 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06012 - - gmx:732563 1271.91