Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06009 ATGAACACTGCTTCTCAGTTTCTCTTCCTTTCACTCATTGCCATATGGCTCATATCTCTAACAGCTTTTGGAGCTACTACTATTCACCCGGACGAAAAGAAAGCTCTTGAAGATATAGCTACATCACTTGGTAAGAAGGATTGGAACTTCGGCATAGATCCATGCAGCAACAAACCTAACTGGTTTACGCCTCCCATACCCAAAATCTTAGAAAACAATGTAACCTGTAACTGCTCTGTTCCTGCTGACAACTTCTGTCATGTTACTATAATAAGTTTAAAAGGGCAAAATCTTCAAGGCAGTCTCCCACGGGAACTGAACAGGTTGCAATACCTTCAAACTATTGATCTCTCTCGCAATTACTTGAACGGTACAATTCCTAAAGAATGGGGCTCCATGACGAATCTTCTTAACATTAATCTCCTTGGAAATCGATTAACTGGTTCAATACCAAAGGAGATTGCAAATATATCAACCCTGCTTCAGTTGGAGTTAACGGCTAATCAAATGTCTGGAAATATTACTTCTGAGCTTGGGAATCTCCCCCAGATTCGAACACTGCGATTTTCTTCTAACAATTTTTCTGGAGAGCTACCTGTGACATTAGCCAAGCTCGCTACATTGCAAGAGTTCCAAATTTCGGACAACCAATTCTCAGAAAAGATACCCGATTTTATTCAGAACTGGACTAATATCAATACGCTAATCATTCAAGGGAGCGGATTAAGTGGACCAATTCCTTCCGAAATTTCACTATTGAGAAACTTAACCGACTTGAGAATTAGTGATTTAAATGGATCTGAATATGCACCTTTGCCGCAACTTAAAAATCTGACATCGTTAAGCAAACTGCTTCTAAGGAATTGCAACATCAATGGAACACTACCTGATCTCGGGACTAAGACATCGTTAAAATACTTAGACTTCAGCTTTAACAAATTAAGTGGAACAATTCCAAGTACCTACGCTGACATAAACGATATTATGAACTTCATATTTTTAACTGGAAACCTTCTCACTGGACCAATACCTTCTTGGAAAACGAACGTCTACGTAGATCTTTCGTACAATAACTTCAGCGTCAGCCAAGGGAATCGGATATGTCAAAATGATAAAGTAAACTTGTTTTCTACCTCATGGGCAAATAATAACATAGGAACAGTTTCGTGTTTGAGCGGATGCACCAATCCCTCCTACTCCCTTTATATAAATTGTGGTGGACAGCAAGAAACAGTTAGCAGAACAAGTTATAGTGGCGATTCAGATTCACCTGGAGCAGCTAAATTCCATGTCAGTCCAACAGGAAATTGGGCATTTAGCACCACTGGTATATTCATTGATAGTGACCAACTCGGAGAAACTTATTCCCCGCAAAATGTCACCACACTTACTATGGCAGATGCTGATTTGTACATGAATGCACGTGGTTCTGCTATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAATGGAAGCTACACAGTAAATCTACATTTTGCTGAAATAATGTTCAGAGACGACCAAACTTATGGAAGTCTTGGAAGACGTGTATTTGATATCTACCTTCAGGGAAAGCCAGTGCAAAAGGACTTCAATATTGCCAAAGAAGCAGGAGGAGTTGGTAAGAAAGTCATAAAACAGTTCAAAGATGTTGTTGTCACTAGTAATACCTTGGAGATCCGTTTGTATTGGGCTGGAAAAGGGACACAGGCTCTCCCAAATAGATCAATATTTGGTCCTCTTATATCTGCCATATCAGTGGAATCTGACTCTCCACCTGGAACTGGAAGCATATCTGCAGGAGCTGTGGTTGGAATTGTGGTTGCAGCAACAGTTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAAAAAAACTCATTAGCAAAAGACTTGAAGAGTTTAGACGTTCAAACGGGTATATTTACCTTACGACAAATCAAAGCAGCTACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCTGTTTACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTAAAACAACTTTCTTCTAAGTCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAACACCCTTATCTCGTTAAACTCCACGGCTGCTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACCTGGAAAACAATAGTCTAGCTCGTGCCTTATTTGGTTCAGAGGAACACCAAATAAAATTACATTGGTCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTATTGCTTGATACGAATCTTGACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGACGAGGAGGACAATACTCACATTAGTACTAGAATTGCCGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACAGACAAAGCAGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAGTCGTTAGTGGAAGAAACAACACCCTTCATCGGGCAAAGGAGGAAGCAGTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAGAGGGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGTTCAGATTTCAACAAAAAGGAAGCTATTGTGATGATCAATGTGGCTCTTCTATGCACCAATGTCACTTCAAATCTTAGGCCTGCCATGTCATCAGTTGTAAGTTACCTTGAAGGAAGGAGTATGGTTCCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGTATTACTACCAGAAGGAAGAAAATAATACAAGTAGTACGTCATATACACAAAGTCAGAGTTTAATGAGTGATGGGCCATGGACTGCTTCATCTTCATCAGCTGTAGACCTTGATTCTTCCTATTTGGATGGAAGAAATTAA 3012 0.3961 MNTASQFLFLSLIAIWLISLTAFGATTIHPDEKKALEDIATSLGKKDWNFGIDPCSNKPNWFTPPIPKILENNVTCNCSVPADNFCHVTIISLKGQNLQGSLPRELNRLQYLQTIDLSRNYLNGTIPKEWGSMTNLLNINLLGNRLTGSIPKEIANISTLLQLELTANQMSGNITSELGNLPQIRTLRFSSNNFSGELPVTLAKLATLQEFQISDNQFSEKIPDFIQNWTNINTLIIQGSGLSGPIPSEISLLRNLTDLRISDLNGSEYAPLPQLKNLTSLSKLLLRNCNINGTLPDLGTKTSLKYLDFSFNKLSGTIPSTYADINDIMNFIFLTGNLLTGPIPSWKTNVYVDLSYNNFSVSQGNRICQNDKVNLFSTSWANNNIGTVSCLSGCTNPSYSLYINCGGQQETVSRTSYSGDSDSPGAAKFHVSPTGNWAFSTTGIFIDSDQLGETYSPQNVTTLTMADADLYMNARGSAISLTYYGFCLANGSYTVNLHFAEIMFRDDQTYGSLGRRVFDIYLQGKPVQKDFNIAKEAGGVGKKVIKQFKDVVVTSNTLEIRLYWAGKGTQALPNRSIFGPLISAISVESDSPPGTGSISAGAVVGIVVAATVIIILVFGILWWKGCFGKKNSLAKDLKSLDVQTGIFTLRQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLHGCCVEGDQLLLIYEYLENNSLARALFGSEEHQIKLHWSTRQKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDTNLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEVVSGRNNTLHRAKEEAVYLLDWAHLLKERGDLMELVDRRLGSDFNKKEAIVMINVALLCTNVTSNLRPAMSSVVSYLEGRSMVPEFVSDSSEVMDEKKLEVMRQYYYQKEENNTSSTSYTQSQSLMSDGPWTASSSSAVDLDSSYLDGRN 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06009 1003 ProSiteProfiles Protein kinase domain profile. 659 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06009 1003 Gene3D Phosphorylase Kinase; domain 1 627 734 - -
Vivi2g06009 1003 Gene3D Ribonuclease Inhibitor 31 198 IPR032675 -
Vivi2g06009 1003 Gene3D Ribonuclease Inhibitor 199 267 IPR032675 -
Vivi2g06009 1003 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 628 734 - -
Vivi2g06009 1003 Gene3D Ribonuclease Inhibitor 268 369 IPR032675 -
Vivi2g06009 1003 FunFam Putative LRR receptor-like serine/threonine-protein kinase 735 942 - -
Vivi2g06009 1003 SUPERFAMILY Protein kinase-like (PK-like) 642 944 IPR011009 -
Vivi2g06009 1003 SMART serkin_6 659 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06009 1003 Gene3D Transferase(Phosphotransferase) domain 1 735 945 - -
Vivi2g06009 1003 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 198 - -
Vivi2g06009 1003 MobiDBLite consensus disorder prediction 965 996 - -
Vivi2g06009 1003 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 199 265 - -
Vivi2g06009 1003 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 967 - -
Vivi2g06009 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672|GO:0006468
Vivi2g06009 1003 SUPERFAMILY L domain-like 52 405 - -
Vivi2g06009 1003 Pfam Protein tyrosine and serine/threonine kinase 661 927 IPR001245 GO:0004672|GO:0006468
Vivi2g06009 1003 CDD STKc_IRAK 665 932 - -
Vivi2g06009 1003 MobiDBLite consensus disorder prediction 965 1003 - -
Vivi2g06009 1003 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 398 590 - -
Vivi2g06009 1003 Pfam Malectin domain 400 585 IPR021720 -
Vivi2g06009 1003 Gene3D - 398 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06009 Vivi-Chr2 191466824 191473931 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06009 25 975 Receptor kinase-like Gene Family AT1G53420 53.686 0.0 981
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi2g06009 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06009 - - gmx:732563 1268.45