LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g06006	ATGGTGAATCTTCTTAACATTACTCTCCCTGGAAATCGATTAACGGGGTCAATACCAAAGGAGATTGCAAATATATCTACCCTGCTTCACTTGGAGTTAACGGCCAATCAAATGTCTGGGAATATTACTTCTGAGCTTGGGAATCTAACCCAGATTCAAACACTGCGAATTTCCTCTAACAATTTTTCGGGAGAACTACCTGCAACATTGGCCAAGCTCACTACATTGCAAAATTTCCATATTTCAGACAACCAATTCACAGGAAAGATACCCGATTTTATTCAGAACTGGACTAATATCACTACGCTAATCATTCAAGGGAGTGGATTAAGTGGGCCTATTCCTTCCAAAATTTCAATTTTGAGAAACTTAACTGACTTGAGAATTAGTGATTTGAATGAATCTGAATATGCACCTTTGCCCCAACTAAATAATCTGACATTGTTACAAAAACTGATTCTGAGGAATTGCAACATCAATGGAACTCTACCTGAATATCTTAATGCTATCACATCATTAAAATACTTAGACTTCAGCTTTAACAAATTCAGTGGAACAATTCCGAGTACCTATGCTGACATAAATGGCGTGAAATTCATATTTTTAACTGGAAACCTTCTCACAGGACCGGTGCCTTCTTGGAAAAAGAACATCGACGTAGATCTTTCATACAATAACTTCAGCATCACCCAAGAAAGTCAGATATGTCAAAGTGATAAACTAAACTTGTTTTCTACCTCATGGGCAAACAATGACATAGGAACAGTTTCGTGTTTGAGCGAATGTCGCAAACCCTCATACTCCCTTTATATAAATTGTGGTGGAAAGCAAGAAAAAGTCAATGGAGCAAGTTATGATGACGATTCAGATTCACCTGGACCAGCTAAACTCCATGTCAGTCCAACAGGAAAATGGGCATTTAGCACCACTGGTTTGTTCATTGATGGTGATCAACTTGGAGAAACTTATTCCCCACCAGATTTTACTCCACTTACTATGGAAGATGCTAAGTTGTACATGAATGCACGCGGTTCTCCCATTTCTTTGACTTATTATGGGTTTTGTCTGAAAAATGGAAGCTACACGGTAAATCTTCATTTTGCTGAAATAATGTTCACAGACGATCAAACTTATGGTAGTCTTGGAAGACGTGTATTTGATATCTACCTTCAGGGAAATCCAGTGCAAAAGGACTTCAATATTGCAAAAGAAGCAGGAGGAGTTGGTAAGAAAGTCGTAAAACAGTACAAAAATGTTTCTGTTACTAGTAGTACCTTGGAGATCCGTTTGTATTGGGCTGGAAAAGGGACACAATCTCTTCCAAATAGATCAGTATTTGGTCCTCTTATATCGGCCATATCAATGGAATCTGACTCTCCACCTGGAGGCATATCTGCAGGAGTTGTGGTTGGAATTGTGGTTGCCGCAACAGTTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTAAGAAGAAAGAATCATTAGCAAGAGAGCTGAAGAGTTTGGACGTTCAAACTGGTTTATTTGCCTTAAGACAAATCAAAGCAGCTACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCCGTGTATAAGGGATGTTTACCCAATGGGACATTGATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAACACCCTTATCTTGTTAAACTCCATGGTTGTTGTGTGGAAGGAGATCAGTTGTTGCTGGTATATGAATACCTGGAAAACAATAGTCTAGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATTAAATTAGATTGGCCAACAAGGCATAAGATTTGTGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTATTGCTTGATACGAATCTTGACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGTACTAGAATTGCTGGGACCTACGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATCGTTAGTGGAAAGAGCAACACCATGTATCGATCAAAGGAGGAAGCGTTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAGAGGGGTGACCTGACGGAGCTAGTTGATAGAAGATTAGGTTTAGATTTCAACAAAAAGGAGGCTATGGTGGTAATCAATGTGGCTCTCCTATGCACCAATGTCACTTCAAATCTTAGGCCCGCGATGTCATCAGTTGTAAGTTTCCTTGAAGGAAGGAATGCGGTTCCAGAGTTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGTATTACTACCAGAAGGAAGAAAATAATATAAGTACTACCTCACAAAGTCAGCGTATATTAAATGACGGGTCATGGACTGCTACATCTTCATCAGCTGTGGACCTTTATCCTGTCCACCTTGATTCTTCCTATTGGGAGGAAAGAAATTAA	2619	0.3902	MVNLLNITLPGNRLTGSIPKEIANISTLLHLELTANQMSGNITSELGNLTQIQTLRISSNNFSGELPATLAKLTTLQNFHISDNQFTGKIPDFIQNWTNITTLIIQGSGLSGPIPSKISILRNLTDLRISDLNESEYAPLPQLNNLTLLQKLILRNCNINGTLPEYLNAITSLKYLDFSFNKFSGTIPSTYADINGVKFIFLTGNLLTGPVPSWKKNIDVDLSYNNFSITQESQICQSDKLNLFSTSWANNDIGTVSCLSECRKPSYSLYINCGGKQEKVNGASYDDDSDSPGPAKLHVSPTGKWAFSTTGLFIDGDQLGETYSPPDFTPLTMEDAKLYMNARGSPISLTYYGFCLKNGSYTVNLHFAEIMFTDDQTYGSLGRRVFDIYLQGNPVQKDFNIAKEAGGVGKKVVKQYKNVSVTSSTLEIRLYWAGKGTQSLPNRSVFGPLISAISMESDSPPGGISAGVVVGIVVAATVIIILVFGILWWKGCFKKKESLARELKSLDVQTGLFALRQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLHGCCVEGDQLLLVYEYLENNSLARALFGPEEHQIKLDWPTRHKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDTNLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTMYRSKEEAFYLLDWAHLLKERGDLTELVDRRLGLDFNKKEAMVVINVALLCTNVTSNLRPAMSSVVSFLEGRNAVPEFVSDSSEVMDEKKLEVMRQYYYQKEENNISTTSQSQRILNDGSWTATSSSAVDLYPVHLDSSYWEERN	872

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g06006	872	Gene3D	Ribonuclease Inhibitor	2	69	IPR032675	-
	Vivi2g06006	872	Gene3D	Ribonuclease Inhibitor	137	268	IPR032675	-
	Vivi2g06006	872	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	647	659	IPR008271	GO:0004672\|GO:0006468
	Vivi2g06006	872	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	494	600	-	-
	Vivi2g06006	872	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	266	458	-	-
	Vivi2g06006	872	Pfam	Malectin domain	268	453	IPR021720	-
	Vivi2g06006	872	Gene3D	Ribonuclease Inhibitor	70	136	IPR032675	-
	Vivi2g06006	872	SMART	serkin_6	525	796	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g06006	872	Gene3D	Phosphorylase Kinase; domain 1	490	600	-	-
	Vivi2g06006	872	Gene3D	-	269	458	-	-
	Vivi2g06006	872	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	601	808	-	-
	Vivi2g06006	872	CDD	STKc_IRAK	531	798	-	-
	Vivi2g06006	872	ProSiteProfiles	Protein kinase domain profile.	525	777	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g06006	872	FunFam	Putative LRR receptor-like serine/threonine-protein kinase isoform A	66	133	-	-
	Vivi2g06006	872	Gene3D	Transferase(Phosphotransferase) domain 1	601	810	-	-
	Vivi2g06006	872	SUPERFAMILY	L domain-like	3	242	-	-
	Vivi2g06006	872	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	3	834	-	-
	Vivi2g06006	872	SUPERFAMILY	Protein kinase-like (PK-like)	508	812	IPR011009	-
	Vivi2g06006	872	Pfam	Protein tyrosine and serine/threonine kinase	527	795	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g06006	Vivi-Chr2	191445338	191456194	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g06006	4	836	Receptor kinase-like Gene Family	AT1G53420	56.450	0.0	927

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vivi2g06006		PK_Tyr_Ser-Thr	2.5e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g06006	-		-	gmx:732563	1145.95