Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05992 ATGAAGATTCAGTGTAACGTGTGTGAAGCTGCGGAAGCTAAGGTTATGTGTTGTGCTGATGAAGCGGCGTTGTGTTGGGATTGTGACGAGAAAGTTCATGCTGCTAATAAGCTTGCTAGCAAGCATCAGAGAATTCCTCTTTCTAGTTCTTCTTCTCATATGCCTAAATGTGATATTTGTCAGGCTGACTGTGGTAAGTTTGATTCTGATTCTCCTGTTTTAACATCCAACGACGAGGAAATGGAGTACGACGACTACATGGACCGCGTTCCAGATTCATGTTGGACAGTTCCTCAGGTCCCTTCACCTCCTACAGCTTCCGGGCTAAACTGGCCGAGAAACCCTCGGTATTCATCGGATAATACTCTATTTGTTCCTGACATAAGCATGCAACAGTCTCAGAATAATAGTAATTTTTCAAGATCGCAGAATCATCATTAA 441 0.4308 MKIQCNVCEAAEAKVMCCADEAALCWDCDEKVHAANKLASKHQRIPLSSSSSHMPKCDICQADCGKFDSDSPVLTSNDEEMEYDDYMDRVPDSCWTVPQVPSPPTASGLNWPRNPRYSSDNTLFVPDISMQQSQNNSNFSRSQNHH 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05992 146 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vivi2g05992 146 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 64 - -
Vivi2g05992 146 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Vivi2g05992 146 CDD Bbox1_BBX-like 5 47 - -
Vivi2g05992 146 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05992 Vivi-Chr2 191203719 191204718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05992 1 67 C2C2-CO-like Transcription Factor Family AT1G78600 79.104 1.14e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g05992 zf-B_box 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05992 - - vvo:131647753 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05992 2 191203719 191204718 Vivi2g05992 2 191203719 191204718 ECH