Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05988 ATGGTTGGATTCCAGAGCGACCATATGCCTGGGAACAACAAGTATAATGGTGATTATAACAGTTGTCCAGGTAGTGTTGAACGACCATTGAGAGGAAAAAAATTAATCAAAAGCAGCAAGGGATCATCATCTCCCGAAAGTGTTCTTATTAATAATAACAATATCAATAATAGTAGTAATCATAGTAATAATAATAATTGTAATAGCATGAATAACAATAAACATGTGGTTACTGAACCTTTTGAGCATGACATATGCTTAAAAGAATATAATAACTCTGGTGCTTCCTCTGTTGAACGATTCGTGGAAGGTGCTGCTGCAGCGGCAAAGGCTCTTAGTAATGGATATAAAAGGGAAGATGGAAAGCCTTTTCGACAACGGCTTTTGGTTGTGGCTAATAGACTGCCAGTTTCTGCTGTTAGGAAAGGGGAGGATTCTTGGTCGTTGGAGATCAGTGCTGGCGGCTTGGTGAGCGCTCTTTTAGGTGTGAAGGAGTTTGAAGCGAGGTGGATAGGTTGGGCCGGAGTCAATGTGCCAGACGCAGTTGGACAGAAGACACTCACCGAAGCATTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTACTGAAGAGATTGTTCATCAGTACTATAATGGCTATTGCAATAATATTTTGTGGCCCCTTTTTCATTATCTTGGACTTCCGCAAGAAGACCGTCTAGCAACAACTCGTGGTTTTCAATCTCAGTTTGAATCGTACCAGGTGGCAAACCAAATGTTTGCTGATGTTGTAAACGAGGTATATGAAGAGGGAGATATTGTTTGGTGCCATGATTACCATCTTATGTTTCTACCACAATGCTTAAAGAAATTTAACAACAAAATGAAAGTTGGCTGGTTTCTCCATACCCCCTTTCCATCTTCTGAAATTCATAGGACTCTGCCATCTCGCACAGAGCTCCTGCGTGCAGTTCTTGCTGCTGACTTGGTTGGTTTTCACACCTATGATTATGCACGACACTTTGTTAGTGCATGTACTCGTATTCTCGGACTTGAGGCAACACCAGAAGGGGTTGAAGATCAAGGGAAAATGACCCGAGTTGCTGCATTTCCAATTGGTATAGACTCAGATCGATTTATACGTGCACTCGGCTCTTCTGATGTTCAAGGTCCCATCAAAGACTTACAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATTCCTCAAAAACTTCTAGCTTTTGAAAAATTCTTGGAAGAGAATGCTGATTGGCGAGATAAAGTAGTTCTGCTTCAAATTGCTGTGCCAACAAGAACAGATGTTCCCGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGATCACTGACTGCTGTTCCTATACATCACCTGGATCGCACTCTTGACTTTTATGGACTATGTGCTTTGTACGCTGTTACAGATGTAGCACTTGTCACGTCTTTGAGGGATGGAATGAATCTTGTCAGTTACGAGTTTGTGGCCTGCCAGGAAAAAAAGAAGGGGGTTCTCATTCTTAGTGAATTCGCTGGTGCTGCTCAATCTCTTGGTGCTGGGGCACTTCTGGTCAACCCTTGGAACATCACAAAAGTTGCTGAAGCAATTTCCAAAGCTCTGAACATGCCATCTGCAGAGAGAGAGAAGAGACACAGGCATAACTTTCATCATGTAACAACACACACTGCACAGCAGTGGGCAGAAACTTTTGTAAATGATCTGAATGATACTGTTGTTGAAGCACAACTGAGGACAAAGCAAATTCCACCACGGCTCCCGGCCGACGAGGCAATTGAACAATATATGACGTCAACCAATCGGCTACTTATTTTGGGATTTAATGGAACATTAACTGAACCAGTTGAGAAAAAAGGTGATCAGCTGAAAGAAATGGAACTCTCGGTGCATCCAGAACTGAAACTACCGTTGACAAAACTTTGCAGTGACCCAAATACTACAGTTGTCGTGCTTAGTGGAAGTGATAGAACAATTCTAGATGAAAATTTTAAAGAATATGACACTTGGCTAGCAGCGGAGAATGGGATGTTTTTGAACTCTTCAAATGGAGAATGGATGACCACAATGCCAGAACAACTGAATATGGAATGGGTTGACAGCGTGAAGCAAATTTTTGAGTACTTTACTGAAAGAACACCTCGCTCACATTTTGAAGAAAGGGAAGCTTCACTTGTATGGAACTACCGACATGCAGATGTTGAGTTTGGAAAACTTCAAGCAAGAGACTTGCTACAACATCTTTGCACAGGTCCAATTTCAAATGCATCAGTTGAAGTCGTTCAAGGGAGCCGATCAGTTGAGGTCCGAGCTGCTGGTGTTACAAAGGGAGCAGCTGTTGACCGCATCTTGGGGGAGATAGTTCACTGTAAATCCATGACAACACCTATTGATTATGTTCTGTGTATAGGACATTTTCTGGCAAAGGATGAAGATATATACGACTTTTTTGAGCCAGAGCCTTCCTGTTTTGGTGCGAGTCTTCAAAGAAGCAAGTTAACAGAAGCAACTAAGTTTGCTAATGAGAAGGTATCACCTTCGAAGATCCCATCGGTTAAAAATGGATTCAAGTCAACAAATCAAAACAAGGGACAACGACCTGTCTCAAATTCACCGAAGAAAACAACTAATATTTTCAGCCGAGCAGCACGAAAGCCAGCTCCCGAAAAGATCACTTGGAATGTCCTTGACCTCAAGAAAGAGAATTACTTCTCATGCGCTGTTGGCAGAACTCAAACAAATGCTCGCTTTACACTTCCATCACCTGATGAAGTTGCTGAGTTTCTGAAGAAACTTGCGCTTGAATCTTCTCGTAAAAACTGA 2889 0.4185 MVGFQSDHMPGNNKYNGDYNSCPGSVERPLRGKKLIKSSKGSSSPESVLINNNNINNSSNHSNNNNCNSMNNNKHVVTEPFEHDICLKEYNNSGASSVERFVEGAAAAAKALSNGYKREDGKPFRQRLLVVANRLPVSAVRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDAVGQKTLTEALAEKRCIPVFLTEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRGFQSQFESYQVANQMFADVVNEVYEEGDIVWCHDYHLMFLPQCLKKFNNKMKVGWFLHTPFPSSEIHRTLPSRTELLRAVLAADLVGFHTYDYARHFVSACTRILGLEATPEGVEDQGKMTRVAAFPIGIDSDRFIRALGSSDVQGPIKDLQERFKGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENADWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLTAVPIHHLDRTLDFYGLCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGALLVNPWNITKVAEAISKALNMPSAEREKRHRHNFHHVTTHTAQQWAETFVNDLNDTVVEAQLRTKQIPPRLPADEAIEQYMTSTNRLLILGFNGTLTEPVEKKGDQLKEMELSVHPELKLPLTKLCSDPNTTVVVLSGSDRTILDENFKEYDTWLAAENGMFLNSSNGEWMTTMPEQLNMEWVDSVKQIFEYFTERTPRSHFEEREASLVWNYRHADVEFGKLQARDLLQHLCTGPISNASVEVVQGSRSVEVRAAGVTKGAAVDRILGEIVHCKSMTTPIDYVLCIGHFLAKDEDIYDFFEPEPSCFGASLQRSKLTEATKFANEKVSPSKIPSVKNGFKSTNQNKGQRPVSNSPKKTTNIFSRAARKPAPEKITWNVLDLKKENYFSCAVGRTQTNARFTLPSPDEVAEFLKKLALESSRKN 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05988 962 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 127 592 IPR012766 GO:0003825|GO:0005992
Vivi2g05988 962 CDD HAD_TPP 625 842 - -
Vivi2g05988 962 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 119 373 - -
Vivi2g05988 962 Gene3D Glycogen Phosphorylase B; 374 576 - -
Vivi2g05988 962 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 126 595 - -
Vivi2g05988 962 CDD GT20_TPS 127 592 IPR001830 GO:0003824|GO:0005992
Vivi2g05988 962 Gene3D - 714 794 - -
Vivi2g05988 962 MobiDBLite consensus disorder prediction 1 71 - -
Vivi2g05988 962 NCBIfam trehalose-phosphatase 623 954 IPR003337 GO:0003824|GO:0005992
Vivi2g05988 962 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 374 576 - -
Vivi2g05988 962 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 714 794 - -
Vivi2g05988 962 Gene3D Glycogen Phosphorylase B; 119 373 - -
Vivi2g05988 962 Pfam Trehalose-phosphatase 630 847 IPR003337 GO:0003824|GO:0005992
Vivi2g05988 962 Gene3D - 627 808 IPR023214 -
Vivi2g05988 962 SUPERFAMILY HAD-like 624 955 IPR036412 -
Vivi2g05988 962 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 115 955 IPR001830 GO:0003824|GO:0005992
Vivi2g05988 962 MobiDBLite consensus disorder prediction 37 71 - -
Vivi2g05988 962 Pfam Glycosyltransferase family 20 127 592 IPR001830 GO:0003824|GO:0005992
Vivi2g05988 962 MobiDBLite consensus disorder prediction 875 896 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05988 Vivi-Chr2 191028691 191038969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05988 9 959 Trehalose Biosynthesis Gene Families AT1G78580 71.591 0.0 1393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05988 K16055 - gmx:100789554 1482.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05988 2 191028691 191038969 Vivi2g05988 2 191028691 191038969 ECH