Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05927 ATGAGGAAATCCTTGGTTATCGCCTTTCTCATAGCCATATGTTTCATTGCTTTTATCATATCCAAGATTGTTATCTCAATCCTCCTCTATAAAAGATGGAAAAGAAAACATGTCATTTATGAAGGTTATACAGGAGGGAAGATGGTGATATTTAGGTCTTCAATCCTTAAATCTTTAACAACTGAGATGGTGTTAAAGAAGACACAGAAACTGAACAACAAGGACATCATTGGTTCTGGTGGTTACGGTGTAGTTTACGAACTAAAACTAGACGATTCAGCGGCCTTTGCTGTGAAAAGAATGAACCGCGGAACAGCGGAGAGAGATAAAGGATTTGAGAGAGAGTTACAAGCAATGGCAGACATAAAACACCGCAATGTTGTGACTCTTCATGGATATTATACTGCACCACATTACAATCTTCTCATATATGAGTTAATGCCTAATGGAAGTTTGGATTCCCTTTTGCATGGGAGATCGACGAACAAGGTTTTGGATTGGAAAACAAGACACAGAATAGCTTTAGGTTCAGCTAGAGGAATATCATATCTTCACCATGATTGTATCCCTCACATTATCCACAGAGACATCAAGTCAAGTAATATATTGCTAGATCAAAATATGGAAGCTCGAGTTTCGGATTTTGGGTTAGCCACATTGATGGAACCAAACAGAACTCATGTTTCAACGATTGTGGCCGGAACTTTTGGATACTTGGCTCCAGAATATTTTGATACGGGAAGAGCGACACTCAAAGGGGATGTTTACAGTTTTGGAGTTGTGTTATTGGAGCTTTTAACCGGAAAGAAACCTAGTGACGAAGCATTTATGGAAGAGGGAACCAAACTCGTTACATGGGTGAAAGCGGTTGTTCAAGAGAAGAAAGAAGAGGTAGTTCTGGATAGTAGCTTAGGTTCATGTTGTCCAATGCATGAGGTCAACAAGGTGTTCAACATTGCAATGATGTGTCTTGAACCAGATCCTCTGAACAGGCCAACCATGGCTGAAGTCGTTAACCTGCTCGAGAAAACCGAAACAGCATCCTGA 1047 0.4021 MRKSLVIAFLIAICFIAFIISKIVISILLYKRWKRKHVIYEGYTGGKMVIFRSSILKSLTTEMVLKKTQKLNNKDIIGSGGYGVVYELKLDDSAAFAVKRMNRGTAERDKGFERELQAMADIKHRNVVTLHGYYTAPHYNLLIYELMPNGSLDSLLHGRSTNKVLDWKTRHRIALGSARGISYLHHDCIPHIIHRDIKSSNILLDQNMEARVSDFGLATLMEPNRTHVSTIVAGTFGYLAPEYFDTGRATLKGDVYSFGVVLLELLTGKKPSDEAFMEEGTKLVTWVKAVVQEKKEEVVLDSSLGSCCPMHEVNKVFNIAMMCLEPDPLNRPTMAEVVNLLEKTETAS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05927 348 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Vivi2g05927 348 Gene3D Phosphorylase Kinase; domain 1 47 146 - -
Vivi2g05927 348 Pfam Protein kinase domain 73 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g05927 348 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 7 345 - -
Vivi2g05927 348 SUPERFAMILY Protein kinase-like (PK-like) 60 339 IPR011009 -
Vivi2g05927 348 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 147 348 - -
Vivi2g05927 348 ProSiteProfiles Protein kinase domain profile. 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g05927 348 Gene3D Transferase(Phosphotransferase) domain 1 147 348 - -
Vivi2g05927 348 FunFam Receptor-like serine/threonine-protein kinase 42 146 - -
Vivi2g05927 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Vivi2g05927 348 SMART serkin_6 71 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05927 Vivi-Chr2 189974950 189976972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05927 28 342 Receptor kinase-like Gene Family AT2G35620 47.170 4.22e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vivi2g05927 Pkinase 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05927 - - ahf:112703495 550.436