Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05903 ATGTGTAGTAGAGGCCATTGGAGACCATCTGAGGATGAGAAGCTTAAGGAGTTGGTGGAAAGCTATGGACCTCATAATTGGAACGCCATAGCTGAAAATCTCAGAGGAAGATCAGGAAAAAGTTGTAGGTTGAGATGGTTCAATCAATTAGACCCAAGGATAAACAGAAATCCTTTCACTGAGGAAGAAGAAGAGCGTCTAATAACATCTCATCGGATTCATGGAAATCGATGGGCCGTAATTGCAAGACACTTCCCCGGCCGGACGGATAACGCTGTAAAGAATCATTGGCATGTGATGATGGCGAGGATTCGTCGCGAAAGGTACAAGATATATGCAAAAGGTCCTCTTGATCATCACATAATATTCTCTCCAAATGATCATCAAACAAACTTTGAGACAAGAAATCACCCAAGTATCTCATATAACCCTTTCCAATTTCCGAAGTTTCGGTTTCAAGATCCAAGTTCTTGTTCCACAATGCTTCAAGATAAAACTCAATCAATAGAGTTCTATGATTTTCTTCAAGTAGATTCCAATAAAAGTGAAGTTACTGATAATGCTAGAAGAGATGATGAGGAAGTGAATCAAGATGTTGTGGAGCTGCAGAACAAAGAAAAACATGTTCCATTCATTGATTTTTTGTCTACTTCAAGCTGCTAA 663 0.3937 MCSRGHWRPSEDEKLKELVESYGPHNWNAIAENLRGRSGKSCRLRWFNQLDPRINRNPFTEEEEERLITSHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERYKIYAKGPLDHHIIFSPNDHQTNFETRNHPSISYNPFQFPKFRFQDPSSCSTMLQDKTQSIEFYDFLQVDSNKSEVTDNARRDDEEVNQDVVELQNKEKHVPFIDFLSTSSC 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05903 220 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Vivi2g05903 220 Gene3D - 4 55 - -
Vivi2g05903 220 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Vivi2g05903 220 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Vivi2g05903 220 FunFam MYB transcription factor 4 55 - -
Vivi2g05903 220 PANTHER MYB PROTEIN-RELATED 4 174 - -
Vivi2g05903 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Vivi2g05903 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Vivi2g05903 220 CDD SANT 58 101 IPR001005 -
Vivi2g05903 220 CDD SANT 7 48 IPR001005 -
Vivi2g05903 220 Pfam Myb-like DNA-binding domain 4 50 IPR001005 -
Vivi2g05903 220 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Vivi2g05903 220 Gene3D - 57 121 - -
Vivi2g05903 220 Coils Coil 185 205 - -
Vivi2g05903 220 SMART sant 55 103 IPR001005 -
Vivi2g05903 220 SMART sant 3 52 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05903 Vivi-Chr2 189602888 189605116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05903 1 219 MYB Transcription Factor Family AT1G17950 54.321 3.95e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g05903 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05903 K09422 - gmx:100811746 330.487