Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05900 ATGGGCCGAATAGAAAAGCACCGTTTCTTCAATTTTTCCCGCTGTTTCCTCCAAAAAGATATTTTCACCTTCATTTTCCCGCCGTTTACTTCATTTCAGTTCACCACAGAGACTCAAACGCAGAGAGAGAAAAAGAGAAAGATGAATGCTCCGACGAAGAAAAAGATTGAAAAGAAGTGCAAAATCAGAGGCTACAATATCAAACTCGAAGCCCTCGACGAGATCCTCTCCTTCGTCACTCGATTCGAACTCACCGAACAAGACGAAGCCACCGATCTCGTCCTCGATCAGCTTGAACACGAATCCATCAAATCTACAGTAATCGACGTGGAGCCAGTTCAACGAGTGGTGAACTTGCTACTGGAAGCCGACGAGGCGGGTGAAACCCTTGAAACCTTCGCCTCATCTTCTTCTTCGGCTATTGTCGTCATTGATGTGTTCGATGTTCCTAGATATAAATATGACGCTATCAGAAGGAATTTCTACCAGTACCCAGGAAGCTTATCTCTTCACGGAGATGCAGCAGCCAAATCTGCTTTGTACAGGGATAGGTTTCTGTTGCTGTCCCAGAGGCTTTCTCGTCACCAAGATTTTTCAAAACCTGCTTTTGAGTCTGAACTTTCCCAATTCAGGAGTCGTGAGATATCTCCTATCCAATCTCTAGTTGGGCAAAAAGGTAGACGATGGGTAATGGGAGTAATATCTCAGCTGGAGGATGGGCATTTTTATTTGGAAGACCTTACCGCTTCCGTTAAAATCAGTTTATCTGATGCTAAGATTACTACGGGATTCTTCTTAGAGAACACCATAGTTGTGGCTGAAGGCGAGATGATATCTGCAGAGGGTATTTTTCAGATTTATTCATGTGGATTTCCCCCACCAGAGGATAGGGATAAGTCACTTGAAGTGCTTGCAGGCCATGACTTTTTTGGTGGTGGTACTTTTACAAAAGAAGAAACGATCAGACAGGAAGAGATGGAGAAAAGAGCAGTCAATGACATGTTTGTCATACTATCTGATATTTTTGTAGACAAAGAAGAGGCTTTGGGAAAGCTAGAGATTGTTCTTGATGGTTTTGAGAGTGAGGAAGTCGTTCCTTCCTTATTTGTTTTCATGGGAGACTTCTGTTCTGTGCCATATAGCCAAGCATCAGGCCCTTTCTCGATCCTGAGGTTGCAGTTTGGCAGGCTAGGGAAAATTATTGCAGCCCGTCCAAGGTTAAAGGAGAACAGCCGATTTCTTTTTATTCCAGGTCCTGGTGATATAGGTCCTTCAACAGTCCTTCCTAGGTGTAGATTACCTAAATGTTTGACTGAGGAGCTCCAAAAGTCTATTCCCGATGCCATATTTTCAAGCAATCCATGCAGGGTAAAATTCTATACACAAGAAATTGTGTTTTTCCGGCAGGATCAGCTGTATAGAATGAGTCGTTCTTCTCTAGTGCCACCTTCTGTGACAGAAACTACTGATCCTTTTCAGCATTTTGTTGCCACGATAACCCACCAGAGTCATCTCTGTCCATTACCTCTAACTAAACAGCCCATCATATGGAATTATGACCATGGCCTTGATTTATATCCAACTCCGCACACGATAGTCTTGGGAGAGAGAAGTCCACAGAAAGCTTTTAAATACACAGGAACCACTTGTTTTAATACCGGATCCTTCTCGATGGATAGCACATTTGTAGTGTACCGTCCTTGCTCTCAGGAAGTTGAATTGTCATCCTTGTGA 1734 0.4325 MGRIEKHRFFNFSRCFLQKDIFTFIFPPFTSFQFTTETQTQREKKRKMNAPTKKKIEKKCKIRGYNIKLEALDEILSFVTRFELTEQDEATDLVLDQLEHESIKSTVIDVEPVQRVVNLLLEADEAGETLETFASSSSSAIVVIDVFDVPRYKYDAIRRNFYQYPGSLSLHGDAAAKSALYRDRFLLLSQRLSRHQDFSKPAFESELSQFRSREISPIQSLVGQKGRRWVMGVISQLEDGHFYLEDLTASVKISLSDAKITTGFFLENTIVVAEGEMISAEGIFQIYSCGFPPPEDRDKSLEVLAGHDFFGGGTFTKEETIRQEEMEKRAVNDMFVILSDIFVDKEEALGKLEIVLDGFESEEVVPSLFVFMGDFCSVPYSQASGPFSILRLQFGRLGKIIAARPRLKENSRFLFIPGPGDIGPSTVLPRCRLPKCLTEELQKSIPDAIFSSNPCRVKFYTQEIVFFRQDQLYRMSRSSLVPPSVTETTDPFQHFVATITHQSHLCPLPLTKQPIIWNYDHGLDLYPTPHTIVLGERSPQKAFKYTGTTCFNTGSFSMDSTFVVYRPCSQEVELSSL 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05900 577 Gene3D - 49 119 - -
Vivi2g05900 577 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 49 577 IPR016266 GO:0003677|GO:0006261|GO:0008622
Vivi2g05900 577 Pfam DNA polymerase alpha/epsilon subunit B 335 540 IPR007185 GO:0003677|GO:0006260
Vivi2g05900 577 PIRSF DNA_pol_epsilon_2 47 577 IPR016266 GO:0003677|GO:0006261|GO:0008622
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05900 Vivi-Chr2 189552393 189559535 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05900 63 546 Core DNA Replication Machinery Family AT5G22110 63.017 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05900 K02325 - qsa:O6P43_008430 776.933