Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05898 ATGAATGCTCCGACGAAGAAAAAGATCCAACAAAAGTGCGAAATCAGAGGCTATAATATCAAACTCGAAGCCGTTGACGAGATCCTCTCCTTCGTCACTCGTTTCGAACTCACCAAACAAGACGAAGCCATCGATCTCGTCCTCGATCAGCTTGAGCAGGAATCCATCAAATCTACAGTAATCGATGTGGAGCCAGTTCGACGAGTGGTGAACTTGCTATTGGAAGCCGGCGCGGAGGAGGAAACCTTTGAAACGTTTGCTTCATCTTCTTCTTCCGCTATTGTCGTCATTGAGGTGTTCGACGTGTTCTACCAGCAAGTTCTTTTTTCTTTCTTGGTGTTTTGTTTCTGTTAA 354 0.452 MNAPTKKKIQQKCEIRGYNIKLEAVDEILSFVTRFELTKQDEAIDLVLDQLEQESIKSTVIDVEPVRRVVNLLLEAGAEEETFETFASSSSSAIVVIEVFDVFYQQVLFSFLVFCFC 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05898 117 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 2 104 IPR016266 GO:0003677|GO:0006261|GO:0008622
Vivi2g05898 117 Gene3D - 2 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05898 Vivi-Chr2 189538207 189538780 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05898 16 102 Core DNA Replication Machinery Family AT5G22110 45.455 6.85e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05898 K02325 - vvo:131647712 189.504