Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05896 ATGGTTATCTCCACAACTGTCAAACATCCAGATGAACATAGTGAGAGCATAGACTGTACTTTTGCTTCTAGATACGTGCGTGAACCAGTTCCAAAGTTCAAGTTGTCAGAGAGTTCTATACCAAAAGATGCAGCATATCAGATAATAAATGATGAGTTGATGTTAGATGGGAAACCAAGGCTTAACTTGGCTTCGTTTGTGACTACTTGGATGGAACCTGAGTGTGATAAGCTTATCATGGATTCACTTAACAAGAACTATGTTGACATGGATGAGTATCCTGTCACCACTGAGCTTCAGAACCGGTGTGTGAATATAATAGCACATCTCTTCCATGCTCCTATCGGTGCAGAAGAAACTGCAGTAGGTGTTGGAACTGTAGGATCATCAGAGGCAATAATGTTAGCTGGTTTGGCTTTTAAAAGGAAGTGGCAGACAAAGAGAAAATCAGAAGGCAAACCTTATGACAAGCCCAACATTGTTACCGGGGCTAATGTCCAGGTTTGTTGGGAAAAATTTGCTAGGTACTTTGAGGTTGAACTAAAAGAAGTGAAACTCACAGAGGGATACTATGTAATGGATCCATTGAAAGCAGTTGAAATGGTAGATGAGAACACTATCTGCGTTGCAGCCATTTTGGGTTCAACACTGACCGGAGAGTTTGAGGATGTGAAGCTTCTTAACGAACTTCTTACTATAAAGAACAAGGAGACAGGATGGGATACACCGATTCATGTCGATGCTGCGAGTGGAGGTTTTGTTGCTCCATTTCTCTACCCTGATCTGCTATGGGATTTTCGCTTGCCATTGGTGAAAAGTATCAATGTTAGCGGTCACAAGTACGGTCTTGTCTACCCTGGTATTGGTTGGGTTGTCTGGAGGAATCAAGATGACTTGCCGGCTGATCTTGTTTTTCATATCAATTATCTTGGATCCGATCAACCAACTTTCACATTGAATTTTTCCAAAGGATCGAGTCAAATCATTGCTCAATACTACCAATTCATACGACTCGGATTCGAGGGCTACAAAAATGTGATGATAAATTGCTTGGCGAACACAAGAATTCTGAAAGAAGGAATTGAGAAAACTGGAAAGTTTAAGATTGTGTCCAAGGACGTCGGCGTGCCACTTGTAGCCTTCTCCTTGAAAGACAGTAGCCGACACACGGTATTCGAGATAGCAGACCATTTGAGAAAATACGGGTGGATAGTTCCGGCCTACACAATGCCTGCAGATGCGCAACACATCGCTGTCCTCCGTGTGGTGATCAGGGAGGACTTTAGCCGCAGCTTGGCTGAGAGACTTGTTTCTGATATTTGCAAAGTTGTGACTCTCTTGGAGACACTTCCAAGTACTATCGCCTCGAAAGATGCTCATGTCGCAGTTATCGCGAGTGAGACGAGCCATGAGGTTAAGAAAGATATTACAGAGACTCAAGCCGAGATTGCACGTTATTGGAAGAAGATTGCTAAAGGAAAGAGAGTTGGAACATGCTAG 1500 0.43 MVISTTVKHPDEHSESIDCTFASRYVREPVPKFKLSESSIPKDAAYQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMDSLNKNYVDMDEYPVTTELQNRCVNIIAHLFHAPIGAEETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKSEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGYYVMDPLKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTIKNKETGWDTPIHVDAASGGFVAPFLYPDLLWDFRLPLVKSINVSGHKYGLVYPGIGWVVWRNQDDLPADLVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMINCLANTRILKEGIEKTGKFKIVSKDVGVPLVAFSLKDSSRHTVFEIADHLRKYGWIVPAYTMPADAQHIAVLRVVIREDFSRSLAERLVSDICKVVTLLETLPSTIASKDAHVAVIASETSHEVKKDITETQAEIARYWKKIAKGKRVGTC 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05896 499 SUPERFAMILY PLP-dependent transferases 8 447 IPR015424 -
Vivi2g05896 499 Gene3D - 364 451 - -
Vivi2g05896 499 CDD DOPA_deC_like 62 440 - -
Vivi2g05896 499 FunFam Glutamate decarboxylase 7 68 - -
Vivi2g05896 499 FunFam Glutamate decarboxylase 69 363 - -
Vivi2g05896 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 42 384 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vivi2g05896 499 FunFam Glutamate decarboxylase 364 451 - -
Vivi2g05896 499 NCBIfam glutamate decarboxylase 20 447 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vivi2g05896 499 Gene3D - 1 68 - -
Vivi2g05896 499 Gene3D - 69 363 IPR015421 GO:0003824
Vivi2g05896 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05896 Vivi-Chr2 189525213 189528179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05896 1 495 Calmodulin-binding Proteins AT2G02010 76.566 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05896 K01580 - gmx:100796475 871.307