Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05893 ATGGCTGAGTTTGGGACAGATGAAGCACCAATGCTGTCAGAAACTAATCCGAAACAATCAAGTGAACACGATGATTCCAAATTCAAGACTCATGTAACTCGAACGCGAAGTGTATCGATTTCCATTCCCATGATTCCTATTGATCCATACGAAACAGATACTAATCTTAAGAGACACACTGGTCCTCTAAGGAGTAAAAGAAAAACACAATATAATCCAATCAGTGGTCCGTTATATGTTACTGATAAATCTGGAAATCTTTTTAAGCAGAATATGATCGCGCCGATTTGCAACACTGTGGAAAGTAAGACAGAAAAGTTTCCTTTAAGTGGCACGAATGAATGCGATTTTCAGAATAACTATGCTAATAAAAACGAACATTTAGTAAGATCTGGTCAATTGGGAATGTGTAATGATCCTTACTGTACTATCTGTCCGGCTTACTTCAAGGCTACTCAACAAAGGGATTCTAAGAATTCGGGTTTGTTCAATCCTAAGTTTCAGAATGTTCTCTATGGAGATGCCAAGGATTGGGCAAGAAGAATTTCTGCTTTCTTGATTCCGAATATACCTAGAGTTATGAATCCTCATAATAAACTTGTACAAAAATGGAATAAATTTTTCGCAATTTGTTGTTTGGTCGCAATTTTTGTCGATCCATTGTTTTTCTTCTTGCTCTATGTGGATAAGGAACAAAAATGTATTGTTATAAACTCAACTATGACAAAGGTGCTTGTTATACTTAGAAGTATGAATGACTTCATACATTTCCTAAACATTATTCTTCAGTTTAGGTTGGCTTATGTGGCCCCGGAGTCTAGGGTGGTTGGTGCTGGAGAGTTAGTTGACCATCCTAAGAAAATAGCTCTTCACTATCTTCACACATATTTTGTTTTTGATTTGTTTGTTGTACTTCCACTTCCTCAGATAATGATATTGTTTGTCATACCAAAACACTTGGGAACATCAGGAGCAAATTATGCAAAGAATCTTTTGCGTGCTGTCATCCTTGCTCAGTACATTCCTAGATTGTGTAGATTTCTCCCTATGCTAATTTCTCCAACCGGATTCATATTCGAGTCAGCGTGGGCGAGTTTCTTCATAAATCTTTTTACCTTTATGCTATCTGGCCATGTTGTTGGGTCATGGTGGTACCTCTTCGGTTTGCAGAGGGTTAATCAATGTCTACGAAATGCCTGCAAGAAAACATATTTTGATGAATGCTCAAAATTCATTGATTGTGGACATGGAAACATTGAGCAACATCTAATTGAAACAAATTGGACTCAATGGAAGAAAAATGACAATGCAAGTGCTTGTTTTACCGAAAATGGTTTTGAGTATGGGATCTATCTAAAAGCTGTCAACCTTACTACAAAAGATAATGTGATCACAAGATATGTATATTCGTCATTTTGGGGATTCCAACAAATTAGTACTCTAGCGGGAAATTTGACACCGAGCTATTTTATTTGGGAAGTCCTTTTCACAATGGGAATTATTGGATTAGGACTCTTGCTCTTTGCTCTTCTCATTGGAAACATACAGAACTTCCTTCAGGCTCTTGGAAGAAGGAGGCTAGAAATGTCACTAAGACAACGTGATGTCGAACAATGGATGAGCCATAGACGCTTAGGAGAAGACTTGAGAAGGAGAGTGCGACAAGCAGAACGTTATAATTGGGCTGCAACTAGAGGAGTGAATGAAGAAATACTCATGGAGAATTTGCCTGAAGATCTTCAGAGGGACATCAGACGCCATCTCTTTAAATTTGTTAAGAAAGTTCGAATTTTCTCCTTGATGGATGAGCCTATCTTGGATGCCATTTGTGAGAGACTAAGACAAAAAATATATATCAAAGGAAGCAAAGTATTGTACGATGGTGGCTTAGTAGAGAAGGTGGTTTTTATCGTGCGGGGAAAATTGGAGAGCATAGGCGAAGATGGAATTAGAGTTCCGCTGTCCGAAGGCAACGTTTGCGGCGAAGAACTTCTTACATGGTGTCTTGAGCATACTTCAGGAAACAAAGTTTGTGGAAAAACAAGAATTCCAAGACAAAGGTTGATTAGCAATAGGACTGTATTGTGCCTAACAAATGTGGAAGCATTTTCCATTAGAGCAGCAGACCTTGAAGAAGTTACAAAGCTTTTTGCAAGATTTTTGAGGAGTCCAGATGTTCAAGGAGCTATAAGGTATGAATCACCGTATTGGAGATGTCTTGCAGCAACGCGAATCCAGGTTGCATGGAGATACAGAAAGAAATGTCTTTCACGCGCTGACACTTCACAGTCAAACAATAAAGCATCAAAATTATGA 2316 0.3834 MAEFGTDEAPMLSETNPKQSSEHDDSKFKTHVTRTRSVSISIPMIPIDPYETDTNLKRHTGPLRSKRKTQYNPISGPLYVTDKSGNLFKQNMIAPICNTVESKTEKFPLSGTNECDFQNNYANKNEHLVRSGQLGMCNDPYCTICPAYFKATQQRDSKNSGLFNPKFQNVLYGDAKDWARRISAFLIPNIPRVMNPHNKLVQKWNKFFAICCLVAIFVDPLFFFLLYVDKEQKCIVINSTMTKVLVILRSMNDFIHFLNIILQFRLAYVAPESRVVGAGELVDHPKKIALHYLHTYFVFDLFVVLPLPQIMILFVIPKHLGTSGANYAKNLLRAVILAQYIPRLCRFLPMLISPTGFIFESAWASFFINLFTFMLSGHVVGSWWYLFGLQRVNQCLRNACKKTYFDECSKFIDCGHGNIEQHLIETNWTQWKKNDNASACFTENGFEYGIYLKAVNLTTKDNVITRYVYSSFWGFQQISTLAGNLTPSYFIWEVLFTMGIIGLGLLLFALLIGNIQNFLQALGRRRLEMSLRQRDVEQWMSHRRLGEDLRRRVRQAERYNWAATRGVNEEILMENLPEDLQRDIRRHLFKFVKKVRIFSLMDEPILDAICERLRQKIYIKGSKVLYDGGLVEKVVFIVRGKLESIGEDGIRVPLSEGNVCGEELLTWCLEHTSGNKVCGKTRIPRQRLISNRTVLCLTNVEAFSIRAADLEEVTKLFARFLRSPDVQGAIRYESPYWRCLAATRIQVAWRYRKKCLSRADTSQSNNKASKL 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05893 771 Pfam Ion transport protein 204 525 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi2g05893 771 ProSiteProfiles cAMP/cGMP binding motif profile. 597 665 IPR000595 -
Vivi2g05893 771 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 137 759 - -
Vivi2g05893 771 CDD CAP_ED 597 713 IPR000595 -
Vivi2g05893 771 MobiDBLite consensus disorder prediction 1 32 - -
Vivi2g05893 771 SUPERFAMILY cAMP-binding domain-like 525 720 IPR018490 -
Vivi2g05893 771 Gene3D Jelly Rolls 595 719 IPR014710 -
Vivi2g05893 771 Gene3D - 205 522 - -
Vivi2g05893 771 MobiDBLite consensus disorder prediction 18 32 - -
Vivi2g05893 771 Gene3D Helix hairpin bin 525 589 - -
Vivi2g05893 771 SUPERFAMILY Voltage-gated potassium channels 196 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05893 Vivi-Chr2 189477605 189482380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05893 7 675 Ion Channels AT3G17700 62.038 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05893 K05391 - gmx:100795955 1209.13