Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05892 ATGAATCATTTCGATTATGACGAAGTTCCGATTATGTTTGAAGCATGTTCACAGCGATCGGATGAGCCTGACGATTCTTCGTTTCGAAGGAACATATCGAGGACACCAAGTGCTTCAATCTCTATTTCTATGGCTTCCATGGATTCATTTGAGAGACAACCGAATCTTGTCGGACATACTGGCCCTCCTCGTACCACGAAGAAAAGTCCGATCAATCAAATGAGCGGCCCACTATATGCAACTGGAAATCCTTTTAAGAATAGTTTTGTAATGGCAGGAAACAAAGTAGGAGAGAATAGGAAAGATGAATATCATTGGGATAACGACTATGGCCGAAAAAATGAACACTTGTTGATGTCGGGACAACTCGGAATGTGTAATGACCCTTATTGCACTACTTGCCCAACTTACATCAAAGTTTCTCAGCAAAGAAAACCAATAGCTTCAATTATCTTTGATCCCAAGTTCCACAATTCTCTTTATGGTGACGCCAAAGGTTTTGGAAGAAAACTTCTTTCTTTCTTTTCTCCATGTATTCCTGGAGTTATGAATCCTCACACTAAAGTTGTACAAGAATGGAACAAGTTTTTGGCGATATTTTGCTTGGTCGCAATTTTTGTTGATCCATTATTTTTCTTTTCGATCTATGTGGATGTGAATAAGAGTAATATAAGTATTGTTATTGACTGGAAAATGGCAAAAATACTTGTTTTACTTAGAAGCGTAACTGATGTTGTGTATTTCTTGAACATTCTTCTTCAGTTTAGGGTGGCTTATGTTTCTCCCGAGTCAACGGTGGTTGGTGCTGGAGACTTAGTTGACCAGCCCAAGGAGATTGCTCTTAATTACTTGAAGGGTTACTTTTTCTTCGATTTATTTGTTGTATTACCTCTTCCTCAGATAATAATATACTTTGTCCTACCAAGTTCCTTGGTGTCTTCAGAAGCAGATTATTCTAAGAATCTTCTACGTCTAGCGATCCTAATACAGTATATTCCTAGATTGTTCAGATTTTTGCCTCTGCTAATTGGCCAGTCTCCAACCGGATTCATATTCGAATCAGTTTGGGCAAGTTTCATTTTAAATCTTCTCATTTTTATGCTATCTGGCCATGTTGTTGGTGCATGCTGGTACCTATTTGGTTTACAGAGGGTTAATCAATGTTTGCGAGATAAAGGTACCTCTGATTGTTTGGATTCCTCGTCTGGTGCTTTTTCTTATGGAATCTATGTAAATGCTATACCACTTTATATGGAAACTAGTGTGGTCAATAAATATGTATATGCACTATTTTGGGGATTTCAGCAAATCAGTACTCTGGCTGGTAATCAAGTCCCAAGCTATTTTGAATGGGAAGTCCTCTTTACAATGTCCATCATTGGATTGGGACTCTTGCTTTTTGCGCTTCTCATTGGAAACATACAAAATTTCCTTCAGGGTCTTGGGCGGAGGAGGCTAGAAATGCAACTTAGAGGCCGTGATGTTGAGAAATGGATGAGCCACCGTCGCTTATCAGAAGAACTCAAAAGGAGGGTACGAGAAGCTGAACGGTATAGTTGGGCTGCAACAAGAGGTGTTCCTGAAAAAATGGTTCTCGAGAATTTGCCGGAAGATCTCCTGATAGACATAAGACGCCATCTCTTCAATTTTGTTACAAAAGTTAGAATATTTTCACATCTTGATGAGGATGAGCCTATCTTAGAAGCCATTCGCGAGAGACTAATACAGACGACATACCTCAAAGAAAGCAGAATTTTGAGCCGGGGTGGTCTTGTACAGAAGATGATATTTATTGTGCGTGGAAAATTGGAGAGCATTGGAGAAGATGGAATTCCGGTTCCGTTATCTGAAGGGGATGCTTGTGGTGAAGAACTTCTTAGATGGTATCTTGAACAATCTTCAGAAAGCAAAGATGGTAAGAATAAGCTTCAAGGAGAGGGGTTGACTAGTGATAGGACAGTAAAATGCTTAACCAATGTTGAGGCATTTTCTCTTCGCGCTAAAGACATTGAAGAAGTCACAACTCTTTTCGCAAGTTTCTTGCGGAGCCCTCGTGTTCAAGGAGTCATAAGGTATGAATCGCCTTATTGGAGATCACTTGCAGCAAACAGAATTCAGGTGGCATGGAGATACATGAAGAAGTGTCTGCGTAACGCTCATACTAGATAA 2169 0.3979 MNHFDYDEVPIMFEACSQRSDEPDDSSFRRNISRTPSASISISMASMDSFERQPNLVGHTGPPRTTKKSPINQMSGPLYATGNPFKNSFVMAGNKVGENRKDEYHWDNDYGRKNEHLLMSGQLGMCNDPYCTTCPTYIKVSQQRKPIASIIFDPKFHNSLYGDAKGFGRKLLSFFSPCIPGVMNPHTKVVQEWNKFLAIFCLVAIFVDPLFFFSIYVDVNKSNISIVIDWKMAKILVLLRSVTDVVYFLNILLQFRVAYVSPESTVVGAGDLVDQPKEIALNYLKGYFFFDLFVVLPLPQIIIYFVLPSSLVSSEADYSKNLLRLAILIQYIPRLFRFLPLLIGQSPTGFIFESVWASFILNLLIFMLSGHVVGACWYLFGLQRVNQCLRDKGTSDCLDSSSGAFSYGIYVNAIPLYMETSVVNKYVYALFWGFQQISTLAGNQVPSYFEWEVLFTMSIIGLGLLLFALLIGNIQNFLQGLGRRRLEMQLRGRDVEKWMSHRRLSEELKRRVREAERYSWAATRGVPEKMVLENLPEDLLIDIRRHLFNFVTKVRIFSHLDEDEPILEAIRERLIQTTYLKESRILSRGGLVQKMIFIVRGKLESIGEDGIPVPLSEGDACGEELLRWYLEQSSESKDGKNKLQGEGLTSDRTVKCLTNVEAFSLRAKDIEEVTTLFASFLRSPRVQGVIRYESPYWRSLAANRIQVAWRYMKKCLRNAHTR 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05892 722 Gene3D - 194 480 - -
Vivi2g05892 722 Gene3D Jelly Rolls 554 678 IPR014710 -
Vivi2g05892 722 SUPERFAMILY cAMP-binding domain-like 484 676 IPR018490 -
Vivi2g05892 722 MobiDBLite consensus disorder prediction 59 73 - -
Vivi2g05892 722 MobiDBLite consensus disorder prediction 53 73 - -
Vivi2g05892 722 Gene3D Helix hairpin bin 483 548 - -
Vivi2g05892 722 SUPERFAMILY Voltage-gated potassium channels 185 485 - -
Vivi2g05892 722 Pfam Ion transport protein 193 483 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi2g05892 722 CDD CAP_ED 556 682 IPR000595 -
Vivi2g05892 722 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 126 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05892 Vivi-Chr2 189371409 189376910 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05892 2 634 Ion Channels AT3G17700 54.185 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05892 K05391 - ccaj:109789004 999.193