Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05890 ATGGCTTCCATGGATTCATTTGAGAGACAACCGAATCTTGTCGGACATACTGGCCCTCCTCGTACCACGAAGAAAAGTCCGATCAATCAAATGAGCGGCCCACTATATGCAACTGGAAATCCTTTTAAGAATAGTTTTGTAATGGCAGGAAACAAAGTAGGAGAGAATAGGAAAGATGAATATCATTGGGATAACGACTATGGCCGAAAAAATGAACACTTGTTGATGTCGGGACAACTCGGAATGTGTAATGACCCTTATTGCACTACTTGCCCAACTTACATCAAAGTTTCTCAGCAAAGAAAACCAATAGCTTCAATTATCTTTGATCCCAAGTTCCACAATTCTCTTTATGGTGACGCCAAAGGTTTTGGAAGAAAACTTCTTTCTTTCTTTTCTCCATGTATTCCTGGAGTTATGAATCCTCACACTAAAGTTGTACAAGAATGGAACAAGTTTTTGGCGATATTTTGCTTGGTCGCAATTTTTGTTGATCCATTATTTTTCTTTTCGATCTATGTGGATGTGAATAAGAGTAATATAAGTATTGTTATTGACTGGAAAATGGCAAAAATACTTGTTTTACTTAGAAGCGTAACTGATGTTGTGTATTTCTTGAACATTCTTCTTCAGTTTAGGGTGGCTTATGTTTCTCCCGAGTCAACGGTGGTTGGTGCTGGAGACTTAGTTGACCAGCCCAAGGAGATTGCTCTTAATTACTTGAAGGGTTACTTTTTCTTCGATTTATTTGTTGTATTACCTCTTCCTCAGATAATAATATACTTTGTCCTACCAAGTTCCTTGGTGTCTTCAGAAGCAGATTATTCTAAGAATCTTCTACGTCTAGCGATCCTAATACAGTATATTCCTAGATTGTTCAGATTTTTGCCTCTGCTAATTGGCCAGTCTCCAACCGGATTCATATTCGAATCAGTTTGGGCAAGTTTCATTTTAAATCTTCTCATTTTTATGCTATCTGGCCATGTTGTTGGTGCATGCTGGTACCTATTTGGTTTACAGAGGGTTAATCAATGTTTGCGAGATAAAGGTACCTCTGATTGTTTGGATTCCTCGTCTGGTGCTTTTTCTTATGGAATCTATGTAAATGCTATACCACTTTATATGGAAACTAGTGTGGTCAATAAATATGTATATGCACTATTTTGGGGATTTCAGCAAATCAGTACTCTGGCTGGTAATCAAGTCCCAAGCTATTTTGAATGGGAAGTCCTCTTTACAATGTCCATCATTGGATTGGGACTCTTGCTTTTTGCGCTTCTCATTGGAAACATACAAAATTTCCTTCAGGGTCTTGGGCGGAGGAGGCTAGAAATGCAACTTAGAGGCCGTGATGTTGAGAAATGGATGAGCCACCGTCGCTTATCAGAAGAACTCAAAAGGAGGGTACGAGAAGCTGAACGGTATAGTTGGGCTGCAACAAGAGGTGTTCCTGAAAAAATGGTTCTCGAGAATTTGCCGGAAGATCTCCTGATAGACATAAGACGCCATCTCTTCAATTTTGTTACAAAAGTTAGAATATTTTCACATCTTGATGAGGATGAGCCTATCTTAGAAGCCATTCGCGAGAGACTAATACAGACGACATACCTCAAAGAAAGCAGAATTTTGAGCCGGGGTGGTCTTGTACAGAAGATGATATTTATTGTGCGTGGAAAATTGGAGAGCATTGGAGAAGATGGAATTCCGGTTCCGTTATCTGAAGGGGATGCTTGTGGTGAAGAACTTCTTAGATGGTATCTTGAACAATCTTCAGAAAGCAAAGATGGTAAGAATAAGCTTCAAGGAGAGGGGTTGACTAGTGATAGGACAGTAAAATGCTTAACCAATGTTGAGGCATTTTCTCTTCGCGCTAAAGACATTGAAGAAGTCACAACTCTTTTCGCAAGTTTCTTGCGGAGCCCTCGTGTTCAAGGAGTCATAAGGTATGAATCGCCTTATTGGAGATCACTTGCAGCAAACAGAATTCAGGTGGCATGGAGATACATGAAGAAGTGTCTGCGTAACGCTCATACTAGATAA 2040 0.3971 MASMDSFERQPNLVGHTGPPRTTKKSPINQMSGPLYATGNPFKNSFVMAGNKVGENRKDEYHWDNDYGRKNEHLLMSGQLGMCNDPYCTTCPTYIKVSQQRKPIASIIFDPKFHNSLYGDAKGFGRKLLSFFSPCIPGVMNPHTKVVQEWNKFLAIFCLVAIFVDPLFFFSIYVDVNKSNISIVIDWKMAKILVLLRSVTDVVYFLNILLQFRVAYVSPESTVVGAGDLVDQPKEIALNYLKGYFFFDLFVVLPLPQIIIYFVLPSSLVSSEADYSKNLLRLAILIQYIPRLFRFLPLLIGQSPTGFIFESVWASFILNLLIFMLSGHVVGACWYLFGLQRVNQCLRDKGTSDCLDSSSGAFSYGIYVNAIPLYMETSVVNKYVYALFWGFQQISTLAGNQVPSYFEWEVLFTMSIIGLGLLLFALLIGNIQNFLQGLGRRRLEMQLRGRDVEKWMSHRRLSEELKRRVREAERYSWAATRGVPEKMVLENLPEDLLIDIRRHLFNFVTKVRIFSHLDEDEPILEAIRERLIQTTYLKESRILSRGGLVQKMIFIVRGKLESIGEDGIPVPLSEGDACGEELLRWYLEQSSESKDGKNKLQGEGLTSDRTVKCLTNVEAFSLRAKDIEEVTTLFASFLRSPRVQGVIRYESPYWRSLAANRIQVAWRYMKKCLRNAHTR 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05890 679 Gene3D - 152 437 - -
Vivi2g05890 679 Gene3D Helix hairpin bin 440 505 - -
Vivi2g05890 679 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 83 671 - -
Vivi2g05890 679 MobiDBLite consensus disorder prediction 16 34 - -
Vivi2g05890 679 Pfam Ion transport protein 150 440 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi2g05890 679 SUPERFAMILY cAMP-binding domain-like 441 633 IPR018490 -
Vivi2g05890 679 MobiDBLite consensus disorder prediction 1 34 - -
Vivi2g05890 679 CDD CAP_ED 513 639 IPR000595 -
Vivi2g05890 679 SUPERFAMILY Voltage-gated potassium channels 142 442 - -
Vivi2g05890 679 Gene3D Jelly Rolls 511 635 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05890 Vivi-Chr2 189371409 189376967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05890 2 591 Ion Channels AT3G17700 56.113 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05890 K05391 - ccaj:109789004 963.37