Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05888 ATGAATCGTTTTGATAGAGACGAAGTTCCGATTCTGTCAGAAACACGTGCACAACGATCTGATGAACCCGTGGAGTCTAATTTGCGAAGGAACATATCAAGGACACGAAGTGCTTCAATCTCTATTTCTATGGCTGCCACAGATCCATATGAGAGACAACCATATCTTGTCGGACATACCGGTCCGCTTCGTTCCACAAGGAAAACTCCGGTCAGCCAAATGAGTGGGCCACTATATCCTACTCCTGCAACTGGTAATCCTTTTCAGAATAGTATAGTAGTGGCGGGAAACAGAGTAGGAGAGAACAAGACAGAGAAGTTTGATGACAATGATGAAAATCATTGGAATAATAAATATGACAAAAAAAATGAACATTTAGTGAGGTCTGGACAACTCGGAATGTGTAATGATCCTTATTGTACTACTTGTCCTACTTACTTCAAAGTTGCTCAGAAAAGAAAGCCACGAGCTTCCACTATATTTGATCCTAAGTTCCACAATAGTCTTTATGGCGACGCCAAAGGTTTTGGAAGAAAACTTTTTTCTTTCTGCTTTTCATGCATTCCTGGAGTTATGAACCCTCACACTAAAGTTGTACAACAATGGAACAAATTTTTGGCCATATTTTGCTTGGTCGCAATTTTTGTTGATCCGTTATTTTTCTTCTTAATCTATGTGAGCAAGGAAAAAAAATGTATTCAGATCAACGGGCCAATGGCAACAACACTCATTGTACTTAGAAGCATAACTGATATGGTGTATTTATTGAACATTCTTCTCCAATTTAGGTTGGCTTATGTTTCTCCTGAATCTAGGGTGGTTGGTGCTGGAGATTTAATTGACCATCCCACGAAAATTGCTGTTAATTACTTTAAGAGTTATTTTTTCTTCGACTTATTTGTTGTATCACCTCTTCCTCAGGTAATGATTTTGTTCGTCCTGCCTACTTCCTTGGGATCATCAGGAGCAAATTATGTTAAGAATCTTCTACGCCTAGCGATTCTTGTACAATATATTCCCCGATTGTTTAGATTTTTGCCTCTGCTAATTGGCCAATCTCCAACCGGCTTCATATTTGAGTCAGCCTGGGCAAATTTCATTATAAATCTTCTCATTTTTATGCTATCCGGCCATGTTGTTGGGTCGTGCTGGTATCTCTTTGGTCTACAGCGGGTTAACCAATGTTTGCGTGATGCCTGCCATCATGCTAATCTAGATGGATGCATGGATTTGATTGATTGTGCTTATAAAGGGGATCTATTGGCTAAGTGGATTAATGATAAGGGCGCCGATGCTTGTTTGAATTCCTCATCTGATGCTTTTTCTTATGGAATCTATACCTATGCTGTGCCACTTACAACAGAAACTAGGGTGATCAACAAATATGTGTACGCATTGTTTTGGGGATTCCAGCAAATCAGTACTTTGGCTGGTAACCTAGTCCCAAGCTATTTTGTGTGGGAAGTCCTCTTTACAATGTCCATCATTGGATTAGGACTCTTGCTTTTTGCGCTTCTCATTGGAAACATTCAGAACTTTCTTCAAGCTCTTGGACGGAGGAGGCTGGAAATGCAGCTTAGAGGTCGTGATGTTGAACAATGGATGAGTCACCGTCGCTTACCAGAACATCTCAAAAGGAGAGTTCGGCAGGCTGAACGGTATACTTGGGCTGCAACAAGAGGTGTTCCTGAAAAAATGGTTTTGGAGAATTTGCCAGAAGATCTCGTGACAGACATACGACGTCATCTCTTTAAGTTTGTTAATAAAGTTCGTATTTTTTCCCTGATGGATGAGGATGAGCCTATCTTAGATGCCATTCGTGAGCGACTAGTACAAACGACCTACATCAAAGGAAGTAAAATTTTGAGTCAGGGCGGTCTAGTGCAGAAAATGGTGTTTATCGTGCGAGGCAAATTGGAGAGCATTGGAGAAGATGGAATTCCAGTTCCGTTAACTGAAGGGGATGCTTGTGGCGAAGAACTTTTAAGATGGTATCTTGAACAATCTTCTGAAAGCAAAGAGGGTAAAAAAGTGAAGTTTCACGGACAAGGGTTGACTAGTGACAGAACAGTAAGATGCTTGACTAATGTTGAGGCATTTTCACTCCGTTCTAAAGACATTGAAGAAGTCACAACTCTTTTCGCAAGATTCTTGCGGAGCCCTCGCGTTCAAGGAGTCATAAGGTATGAATCGCCTTATTGGAGATCACTTGCAGCAAACAGAATTCAGGTGGCATGGAGATACAGGAAGAAGCGTCTAGGGAGAGCTAATACCACACAATGA 2283 0.4095 MNRFDRDEVPILSETRAQRSDEPVESNLRRNISRTRSASISISMAATDPYERQPYLVGHTGPLRSTRKTPVSQMSGPLYPTPATGNPFQNSIVVAGNRVGENKTEKFDDNDENHWNNKYDKKNEHLVRSGQLGMCNDPYCTTCPTYFKVAQKRKPRASTIFDPKFHNSLYGDAKGFGRKLFSFCFSCIPGVMNPHTKVVQQWNKFLAIFCLVAIFVDPLFFFLIYVSKEKKCIQINGPMATTLIVLRSITDMVYLLNILLQFRLAYVSPESRVVGAGDLIDHPTKIAVNYFKSYFFFDLFVVSPLPQVMILFVLPTSLGSSGANYVKNLLRLAILVQYIPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSCWYLFGLQRVNQCLRDACHHANLDGCMDLIDCAYKGDLLAKWINDKGADACLNSSSDAFSYGIYTYAVPLTTETRVINKYVYALFWGFQQISTLAGNLVPSYFVWEVLFTMSIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEHLKRRVRQAERYTWAATRGVPEKMVLENLPEDLVTDIRRHLFKFVNKVRIFSLMDEDEPILDAIRERLVQTTYIKGSKILSQGGLVQKMVFIVRGKLESIGEDGIPVPLTEGDACGEELLRWYLEQSSESKEGKKVKFHGQGLTSDRTVRCLTNVEAFSLRSKDIEEVTTLFARFLRSPRVQGVIRYESPYWRSLAANRIQVAWRYRKKRLGRANTTQ 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05888 760 Pfam Ion transport protein 204 520 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi2g05888 760 CDD CAP_ED 592 710 IPR000595 -
Vivi2g05888 760 MobiDBLite consensus disorder prediction 1 29 - -
Vivi2g05888 760 Gene3D Jelly Rolls 590 716 IPR014710 -
Vivi2g05888 760 SUPERFAMILY cAMP-binding domain-like 520 713 IPR018490 -
Vivi2g05888 760 Gene3D - 203 517 - -
Vivi2g05888 760 Gene3D Helix hairpin bin 519 584 - -
Vivi2g05888 760 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 135 753 - -
Vivi2g05888 760 MobiDBLite consensus disorder prediction 53 87 - -
Vivi2g05888 760 ProSiteProfiles cAMP/cGMP binding motif profile. 594 662 IPR000595 -
Vivi2g05888 760 MobiDBLite consensus disorder prediction 65 87 - -
Vivi2g05888 760 MobiDBLite consensus disorder prediction 1 30 - -
Vivi2g05888 760 SUPERFAMILY Voltage-gated potassium channels 194 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05888 Vivi-Chr2 189357812 189364637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05888 5 670 Ion Channels AT3G17700 57.794 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05888 K05391 - ccaj:109789004 1135.55