Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05882 ATGGAGTATCATAGTGGAGGAAGTGGGTCCCCTGGTGATCATCATCATCATCACCATGATGGTTCTTCTGAATCTCAGAGGAGAAAGAAACGTTACCACCGTCACACTGCTAATCAGATTCAAAGGCTTGAATCGATGTTCAAGGATTGTCCACATCCTGATGAAAAACAAAGGTTGCAGTTAAGCAGGGAATTAGCCTTGGCTCCTAGACAGATCAAGTTTTGGTTTCAGAACAGAAGGACTCAGATGAAGGCACAACATGAAAGAGGTGAAAATTGTTCACTAAGGGCAGAGAATGATAAAATAAGATGTGAGAATATAGCTATAAGGGAAGCCCTTAAAAATGTCATCTGCCCCTCCTGTGGTGGTCCTCCAATCAATGATGAATGTTACTTTGATGAACAAAAGTTGAGAATTGAAAATGCTCAACTCAAAGAGGAGCTTGATAGAGTATCTAGCATTGCTGCAAAATACATTGGAAGACCAATTTCACAGCTTCCACCAGTTTCACCAATGCACATGTCATCATTGGATTTATCAATGGGAAATTTTGGTGGACAAGGAATGGTTGGAGGACCTTCACTTGATCTTGATCTTCTACCAGGAAGTTCATCAAACATGCCAATGGTTCCTTACCAACCTGCTTGTCTTTCTGATCTCGAAAAGTCGCACATGTCTGACCTTGCTACAAGTGCCATGGGTGAACTGGTTAGGCTTTTGCAGACTGATGATCCTTTGTGGATGAAGTCAAACACTGATGGAAAAGATGTTCTTAACCTTGATGCCTATGCTATGATGTTTGATAAGACTGGTAATCGGTTGAAGAATCCGAATATTCGGATTGAAGCTTCTAGGGATTCTGGTGTTGTTATCATGAATAGTTTAACTTTGGTTGAAATGTTTATGGATCCAAACAAGTGGATGGAGCTTTTTCCTACTATTGTGACAATGGCGAAGACAATCGAAAATATTGTTCCTGGAATGATGGGTGGATATAGTGGTTCTATGCAACTGATGTATGAAGAGTTGCAAGTGCTTTCACCATTTGTGCCTATTAGAGAATTCTACTTTCTGCGCCACTGTCAACAAATTGAGCAAGGTTTATGGGCTATAGTTGATGTTTCATATGATTTTCCTAATGACAACCAATTCGGTTCACAATTTCGATGCCATCGTCTTCCGTCCGGTTGCTTCATTCAAGACATGCCTAATGGATATTCCAAGGTTACTTGGGTTGAACATGTTGAGATTGAAGATAAAACCCCAGTTCATAGGCTTTATAGAAATGTTATCCATAGTGGTGTTGCATTTGGTGCTGAAAGATGGCTCACCACTCTTCAAAGAATGTGTGAAAGACTTGCTTGTCTCATGGTGTCTGCCAATTCTACCCGCGATCTCGGAGGAGTGATTCCATCACCTGAGGGAAAAAGGAGCATGATGAAACTGGCACAAAGGATGGTAACAAATTTCTGTGCAAGTATAAGTGCATCAGCTAGTCATAGATGGACCACACTTTCAGCTGTGAATGAGATTGGAGTCAGAGTTACTGTTAGAAAGAGTACAGATCCTGGTCAGCCTAATGGTATTGTGCTAAGTGCAGCTACTACCATTTGGTTACCTCTTCCTCCACAACATGTTTTCAATTTCTTCAAAGATGAAAGGAAAAGATCTCAGTGGGATGTTCTTTCCAATGGTAATGCTGTTCAAGAAGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGCATTTCTGTTCTTAGGGCTTTTAATACAAGTCAGAACAACATGCTGATACTTCAAGAAAGCTGTGTGGACTCATCAGGTTCACTAGTAGTCTATTGTCCGGTCGATTTACCAGCTATCAACATAGCAATGAGCGGAGAAGACCCGTCCTACATTCCATTACTCCCGTCCGGTTTCACAATTACATCCGACGGAAACCAAAGCGACAACACCGCAATCCACAGCAATAATAATAGTAATAATGGTAATAATAATGGCGACGGAGCATCAACAAGCACAGTCACAAACATAGGAAATAATAGCGGAGGATCATTGATAACAGTTGCATTTCAAATAATGGTAAGCAGTTTACCATCTGCAAAACTTAACATGGAGTCTGTTGCAACTGTGAATGGACTTATTAGTGAGACAGTCCAACACATAAAAGCTGCTTTGAATTGCCCTAGTTCTTGA 2199 0.4088 MEYHSGGSGSPGDHHHHHHDGSSESQRRKKRYHRHTANQIQRLESMFKDCPHPDEKQRLQLSRELALAPRQIKFWFQNRRTQMKAQHERGENCSLRAENDKIRCENIAIREALKNVICPSCGGPPINDECYFDEQKLRIENAQLKEELDRVSSIAAKYIGRPISQLPPVSPMHMSSLDLSMGNFGGQGMVGGPSLDLDLLPGSSSNMPMVPYQPACLSDLEKSHMSDLATSAMGELVRLLQTDDPLWMKSNTDGKDVLNLDAYAMMFDKTGNRLKNPNIRIEASRDSGVVIMNSLTLVEMFMDPNKWMELFPTIVTMAKTIENIVPGMMGGYSGSMQLMYEELQVLSPFVPIREFYFLRHCQQIEQGLWAIVDVSYDFPNDNQFGSQFRCHRLPSGCFIQDMPNGYSKVTWVEHVEIEDKTPVHRLYRNVIHSGVAFGAERWLTTLQRMCERLACLMVSANSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISASASHRWTTLSAVNEIGVRVTVRKSTDPGQPNGIVLSAATTIWLPLPPQHVFNFFKDERKRSQWDVLSNGNAVQEVAHIANGSHPGNCISVLRAFNTSQNNMLILQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTITSDGNQSDNTAIHSNNNSNNGNNNGDGASTSTVTNIGNNSGGSLITVAFQIMVSSLPSAKLNMESVATVNGLISETVQHIKAALNCPSS 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05882 732 FunFam Homeobox-leucine zipper protein GLABRA 2 227 451 - -
Vivi2g05882 732 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 26 728 IPR042160 -
Vivi2g05882 732 CDD homeodomain 28 87 IPR001356 GO:0003677
Vivi2g05882 732 SUPERFAMILY Bet v1-like 219 453 - -
Vivi2g05882 732 Pfam Homeodomain 29 84 IPR001356 GO:0003677
Vivi2g05882 732 SUPERFAMILY Bet v1-like 473 723 - -
Vivi2g05882 732 FunFam Homeobox-leucine zipper protein HDG1 15 102 - -
Vivi2g05882 732 Pfam START domain 229 452 IPR002913 GO:0008289
Vivi2g05882 732 Gene3D - 13 100 - -
Vivi2g05882 732 Gene3D - 232 452 IPR023393 -
Vivi2g05882 732 ProSiteProfiles START domain profile. 218 455 IPR002913 GO:0008289
Vivi2g05882 732 MobiDBLite consensus disorder prediction 21 36 - -
Vivi2g05882 732 ProSitePatterns 'Homeobox' domain signature. 61 84 IPR017970 GO:0000981|GO:0006355
Vivi2g05882 732 SMART START_1 227 452 IPR002913 GO:0008289
Vivi2g05882 732 MobiDBLite consensus disorder prediction 1 36 - -
Vivi2g05882 732 ProSiteProfiles 'Homeobox' domain profile. 26 86 IPR001356 GO:0003677
Vivi2g05882 732 MobiDBLite consensus disorder prediction 647 674 - -
Vivi2g05882 732 SUPERFAMILY Homeodomain-like 6 86 IPR009057 -
Vivi2g05882 732 Coils Coil 134 154 - -
Vivi2g05882 732 CDD START_ArGLABRA2_like 222 451 - -
Vivi2g05882 732 SMART HOX_1 27 90 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05882 Vivi-Chr2 189217304 189222131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05882 24 732 Homeobox Transcription Factor Family AT1G73360 64.624 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi2g05882 START 7.2e-50 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05882 K09338 - gmx:100809075 1182.55