LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g05881	ATGGAGATTAAGGATCAAGTTGAAGGCACAAAGTCTGCTATAATCGGCGCAGTTAGTAAGTGTCATTCCAAAGGTAGAGCAGTGTCTGAAAATGTTGCGAAGTCGCAGGATATACCTTCTGTTGGAAATGACCAGACTCCCAAGGCGAGGAAGCCGTATACCATCACTAAACAAAGGGAGAAGTGGACTGAAGAAGAACATCAAAAATTCGTCGAGGCTTTGAAATTATATGGCCGTGGCTGGCGTCAAATTGAAGAACATATAGGATCCAAAACTGCAGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGCGGGAACCTGATGGCAGCGCTGAAAGTCCTATTCAGCCAATTGACATACCTCCTCCTCGGCCGAAGAGGAAACCTCTTCATCCGTACCCTCGCAAACCTGTTGACTCTTTCAAAGGGCAGTCCGTCCTAAATGAATCGGAAACATCTCCATCGATTAACTTGTCAGTTGCCGAAAACAACACCCAATCTCCAACCTCGGTACTATCTGCATTTGGTTCGGAAGCATTCGGGTCAGCAGCATTTTCTGAACAGGCAAACAGATGCCTTTCTCCAAACTCTTGTACCACTGAGATTCACCCAGTCAGCTTGTCGCCTCTTGAAAAAGAAAACGATTGCCAGACATCGAAATCCTCCGAGGAGGAAGAGAAAGGAACTCCAGCTTCAGTTCCTTTATCCACTGACTTAAAACCAATTATATGCACGAAGTCGGAGATTATTTCTTCGGAAGAAACTCAATGTTTCAAGGAAGATGCTGCGAATATGCCACAGATCACTAGTATTAAGCTGTTTGGCAGAACAGTCTCTATGGTTGATACTCAGAAAACAATAGACATCAAATCTGATGAAACTGTTGAGAATGAGAAAGCTGGCTTAGAAGAGGAATCAGAGAAACTTGTTACACAGCTATCACTAGGCATGTGTAGTGGTAATTGTCAAAGTATGGAACAACAGAAGGAGAATCCGTGCAGTGTTGGCGAATGCGGATCATCTTTACCGTGTTGGAGTTTGTACCAAGGCCTTCCAGCTTTGAGCCTCAAGCCATGCAATCATCAGATTTTAAGTCCTGTGCCTGTCAGGCCTTGTTTGAAGGTAAGAACTCGAGAGGAGGAAAGTTCTTGCACTGGTTCTAATACCGGATCAGTTTGTGATATGGAAAATCAAAGCAAGAACAATTCATCAGATACTGATGATACTCAAAGTCGAAAACACCAACATGAAGGAGTGTTCCTTAAGAAATCTGGAAGAGGGTTTGTACCATATAAAAGATGTGTATCCGAAAGAGACGAAAATTCTTTAATTGTTGGGTTGGAAGAAAGAGAAGGGCAAAGGGCTCGTGTGTGTTCATAG	1392	0.4332	MEIKDQVEGTKSAIIGAVSKCHSKGRAVSENVAKSQDIPSVGNDQTPKARKPYTITKQREKWTEEEHQKFVEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVREPDGSAESPIQPIDIPPPRPKRKPLHPYPRKPVDSFKGQSVLNESETSPSINLSVAENNTQSPTSVLSAFGSEAFGSAAFSEQANRCLSPNSCTTEIHPVSLSPLEKENDCQTSKSSEEEEKGTPASVPLSTDLKPIICTKSEIISSEETQCFKEDAANMPQITSIKLFGRTVSMVDTQKTIDIKSDETVENEKAGLEEESEKLVTQLSLGMCSGNCQSMEQQKENPCSVGECGSSLPCWSLYQGLPALSLKPCNHQILSPVPVRPCLKVRTREEESSCTGSNTGSVCDMENQSKNNSSDTDDTQSRKHQHEGVFLKKSGRGFVPYKRCVSERDENSLIVGLEEREGQRARVCS	463

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g05881	463	CDD	SANT	61	104	IPR001005	-
	Vivi2g05881	463	MobiDBLite	consensus disorder prediction	108	158	-	-
	Vivi2g05881	463	MobiDBLite	consensus disorder prediction	208	240	-	-
	Vivi2g05881	463	MobiDBLite	consensus disorder prediction	386	409	-	-
	Vivi2g05881	463	MobiDBLite	consensus disorder prediction	29	52	-	-
	Vivi2g05881	463	SUPERFAMILY	Homeodomain-like	53	107	IPR009057	-
	Vivi2g05881	463	MobiDBLite	consensus disorder prediction	386	423	-	-
	Vivi2g05881	463	Gene3D	-	61	108	-	-
	Vivi2g05881	463	Coils	Coil	296	316	-	-
	Vivi2g05881	463	PANTHER	SWI/SNF COMPLEX-RELATED	33	299	-	-
	Vivi2g05881	463	MobiDBLite	consensus disorder prediction	29	61	-	-
	Vivi2g05881	463	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	57	106	IPR006447	GO:0003677
	Vivi2g05881	463	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	54	108	IPR017930	-
	Vivi2g05881	463	FunFam	protein REVEILLE 6 isoform X1	61	109	-	-
	Vivi2g05881	463	ProSiteProfiles	SANT domain profile.	57	108	IPR017884	-
	Vivi2g05881	463	Pfam	Myb-like DNA-binding domain	59	102	IPR001005	-
	Vivi2g05881	463	ProSiteProfiles	Myb-like domain profile.	54	104	IPR001005	-
	Vivi2g05881	463	SMART	sant	58	106	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g05881	Vivi-Chr2	189124814	189128273	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Vivi2g05881		Myb_DNA-binding	3.7e-13	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g05881	-		-	gmx:778089	567