Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05881 ATGGAGATTAAGGATCAAGTTGAAGGCACAAAGTCTGCTATAATCGGCGCAGTTAGTAAGTGTCATTCCAAAGGTAGAGCAGTGTCTGAAAATGTTGCGAAGTCGCAGGATATACCTTCTGTTGGAAATGACCAGACTCCCAAGGCGAGGAAGCCGTATACCATCACTAAACAAAGGGAGAAGTGGACTGAAGAAGAACATCAAAAATTCGTCGAGGCTTTGAAATTATATGGCCGTGGCTGGCGTCAAATTGAAGAACATATAGGATCCAAAACTGCAGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGCGGGAACCTGATGGCAGCGCTGAAAGTCCTATTCAGCCAATTGACATACCTCCTCCTCGGCCGAAGAGGAAACCTCTTCATCCGTACCCTCGCAAACCTGTTGACTCTTTCAAAGGGCAGTCCGTCCTAAATGAATCGGAAACATCTCCATCGATTAACTTGTCAGTTGCCGAAAACAACACCCAATCTCCAACCTCGGTACTATCTGCATTTGGTTCGGAAGCATTCGGGTCAGCAGCATTTTCTGAACAGGCAAACAGATGCCTTTCTCCAAACTCTTGTACCACTGAGATTCACCCAGTCAGCTTGTCGCCTCTTGAAAAAGAAAACGATTGCCAGACATCGAAATCCTCCGAGGAGGAAGAGAAAGGAACTCCAGCTTCAGTTCCTTTATCCACTGACTTAAAACCAATTATATGCACGAAGTCGGAGATTATTTCTTCGGAAGAAACTCAATGTTTCAAGGAAGATGCTGCGAATATGCCACAGATCACTAGTATTAAGCTGTTTGGCAGAACAGTCTCTATGGTTGATACTCAGAAAACAATAGACATCAAATCTGATGAAACTGTTGAGAATGAGAAAGCTGGCTTAGAAGAGGAATCAGAGAAACTTGTTACACAGCTATCACTAGGCATGTGTAGTGGTAATTGTCAAAGTATGGAACAACAGAAGGAGAATCCGTGCAGTGTTGGCGAATGCGGATCATCTTTACCGTGTTGGAGTTTGTACCAAGGCCTTCCAGCTTTGAGCCTCAAGCCATGCAATCATCAGATTTTAAGTCCTGTGCCTGTCAGGCCTTGTTTGAAGGTAAGAACTCGAGAGGAGGAAAGTTCTTGCACTGGTTCTAATACCGGATCAGTTTGTGATATGGAAAATCAAAGCAAGAACAATTCATCAGATACTGATGATACTCAAAGTCGAAAACACCAACATGAAGGAGTGTTCCTTAAGAAATCTGGAAGAGGGTTTGTACCATATAAAAGATGTGTATCCGAAAGAGACGAAAATTCTTTAATTGTTGGGTTGGAAGAAAGAGAAGGGCAAAGGGCTCGTGTGTGTTCATAG 1392 0.4332 MEIKDQVEGTKSAIIGAVSKCHSKGRAVSENVAKSQDIPSVGNDQTPKARKPYTITKQREKWTEEEHQKFVEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVREPDGSAESPIQPIDIPPPRPKRKPLHPYPRKPVDSFKGQSVLNESETSPSINLSVAENNTQSPTSVLSAFGSEAFGSAAFSEQANRCLSPNSCTTEIHPVSLSPLEKENDCQTSKSSEEEEKGTPASVPLSTDLKPIICTKSEIISSEETQCFKEDAANMPQITSIKLFGRTVSMVDTQKTIDIKSDETVENEKAGLEEESEKLVTQLSLGMCSGNCQSMEQQKENPCSVGECGSSLPCWSLYQGLPALSLKPCNHQILSPVPVRPCLKVRTREEESSCTGSNTGSVCDMENQSKNNSSDTDDTQSRKHQHEGVFLKKSGRGFVPYKRCVSERDENSLIVGLEEREGQRARVCS 463
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05881 463 CDD SANT 61 104 IPR001005 -
Vivi2g05881 463 MobiDBLite consensus disorder prediction 108 158 - -
Vivi2g05881 463 MobiDBLite consensus disorder prediction 208 240 - -
Vivi2g05881 463 MobiDBLite consensus disorder prediction 386 409 - -
Vivi2g05881 463 MobiDBLite consensus disorder prediction 29 52 - -
Vivi2g05881 463 SUPERFAMILY Homeodomain-like 53 107 IPR009057 -
Vivi2g05881 463 MobiDBLite consensus disorder prediction 386 423 - -
Vivi2g05881 463 Gene3D - 61 108 - -
Vivi2g05881 463 Coils Coil 296 316 - -
Vivi2g05881 463 PANTHER SWI/SNF COMPLEX-RELATED 33 299 - -
Vivi2g05881 463 MobiDBLite consensus disorder prediction 29 61 - -
Vivi2g05881 463 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Vivi2g05881 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Vivi2g05881 463 FunFam protein REVEILLE 6 isoform X1 61 109 - -
Vivi2g05881 463 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Vivi2g05881 463 Pfam Myb-like DNA-binding domain 59 102 IPR001005 -
Vivi2g05881 463 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Vivi2g05881 463 SMART sant 58 106 IPR001005 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi2g05881 Vivi-Chr2 189124814 189128273 Dispersed
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi2g05881 Myb_DNA-binding 3.7e-13 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05881 - - gmx:778089 567