Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05880 ATGGTTGATCCCGCTACTGCTACTATGGCTAACATTGTTGTTGGAGTGCCTTCTCTTTCTCTTCCTTCATTATACCTAACAAATTCAAGTACTTTCACTCTCAACTCCAAAATTAAGACCCAAAACCATAAACTTCATCTCAACTTCTCACAAACCAACCACACAACAATCCCATTTCCATCATCAGAATCACTCAGAAGCAGACGTAGTTGTTCTGTGTTGGCTTGTCTTCCTCCTGCTTCTGAATCCTCATCTTCCAACACTACACCCTCTTCTACTTCTCCTTCAACTAGGCTATATGTCAGTGGGCTGTCATTTCGTACAACAGAAGAGAGCTTGCGAAATGCATTTAATAGTTTCGGTCAACTCGTGGAAGTCAATCTAGTAATGGATAAAGTTGCGAATAGACCAAGAGGGTTTGCTTTCCTTCGTTATGAAACCGAAGAGGGATCCAACAAGGCTATAGAAGGAATGCATGGAAAGTTTCTGGATGGTAGAGTCATATTTGTGGAAATTGCCAAACCAAGATCAAAGCTGACACAAAGATTCAACCAGAACACTATGTAG 567 0.4109 MVDPATATMANIVVGVPSLSLPSLYLTNSSTFTLNSKIKTQNHKLHLNFSQTNHTTIPFPSSESLRSRRSCSVLACLPPASESSSSNTTPSSTSPSTRLYVSGLSFRTTEESLRNAFNSFGQLVEVNLVMDKVANRPRGFAFLRYETEEGSNKAIEGMHGKFLDGRVIFVEIAKPRSKLTQRFNQNTM 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05880 188 PANTHER NUCLEOLAR PROTEIN 8 77 181 - -
Vivi2g05880 188 SUPERFAMILY RNA-binding domain, RBD 84 184 IPR035979 GO:0003676
Vivi2g05880 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Vivi2g05880 188 Gene3D - 61 185 IPR012677 -
Vivi2g05880 188 SMART rrm1_1 98 171 IPR000504 GO:0003723
Vivi2g05880 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05880 Vivi-Chr2 189121285 189123275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05880 97 186 Eukaryotic Initiation Factors Gene Family AT4G34110 29.787 9.21e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05880 - K13195 gmx:100305561 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05880 2 189121285 189123275 Vivi2g05880 2 189121285 189123275 ECH