Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05878 ATGTCACCAGTTGGATTACCACCAGGTTTCAGGTTTCATCCAACTGATGAAGAACTTGTCAATTATTATCTAAAGAGAAAAATCAGTGGTCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTTTATAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTGCCAAGTAGAGATCCAGAGTGGTATTTTTTTGGACCAAGGGACAGAAAATACCCTAATGGATTCAGAACAAATAGAGCAACAAGAGCAGGTTACTGGAAATCAACTGGAAAAGACAGAAGAGTTTCATGCCAAAATAGACCTATTGGTATGAAGAAGACTTTGGTTTACTATAGAGGTAGAGCTCCTCAAGGAATTAGAACCGATTGGGTTATGCATGAGTATCGTCTCGATGATAAAGAGTGCGAGGACAACTCTGGATTACAGGATACTTATGCATTGTGTCGCGTGTTCAAGAAAAATGGAATTTGTTCTGATATGGAAGAGCAACAAGCGCAAGCGCAATGTAACATGTCACTAATAGAATGCTCACAGACCATAATCAACGAGTGCGAACAAATGTCTCCGGACATACTTGGTGCATCGTCTTCATGCTTAGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATTACAGAAGATGCATGGTATTCTTCTAATGCTGGAATGGTTGGTGGTGAAGAAGTTTCACATGTTACATTTACAAACTAG 723 0.3873 MSPVGLPPGFRFHPTDEELVNYYLKRKISGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSCQNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDNSGLQDTYALCRVFKKNGICSDMEEQQAQAQCNMSLIECSQTIINECEQMSPDILGASSSCLEEEDKDDSWMQFITEDAWYSSNAGMVGGEEVSHVTFTN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05878 240 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 190 - -
Vivi2g05878 240 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Vivi2g05878 240 FunFam Nac domain-containing protein 86 15 159 - -
Vivi2g05878 240 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vivi2g05878 240 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vivi2g05878 240 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05878 Vivi-Chr2 189108011 189111411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05878 1 231 NAC Transcription Factor Family AT3G17730 74.793 6.56e-131 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi2g05878 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05878 - - gmx:100788036 476.478