Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05854 ATGGGATTCCCGCTTTTGTCTCTTTCACCATCGCCAACCACGCTTTCCCTCTCAATTATTATTGGTTCCACCCACCAAAACAAAAACCTCACAACTCTCAAAAACTCCTTCTTTTTTTACCTTCCCCTCTCTGTTTGCTCTTCCTTCGCTGTGGTATCCTGTCTCAGCGAAGGTTTTGCAGCAAACATGAACGGGAAGGCTTCCGTTTCTAAGGAGCTTCATGCCAAACACACCAAGATCTTAGAAGGACTTCTTAAGCTACCTGACAACAGGGAATGTGCAGACTGTTGGACCAAGGCACCGCGATGGGCTAGTGTGAACTTAGGAATTTTCATTTGCATGCAGTGTTCAGGGATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGAGGTCCACAACTTTGGATACATGGCTACCAGATCAAGTTTCTTTCATGCAATTTATGGGTAATGTCAAGTCAAATAAGCACTGGGAGGCTAAACTACCACCGGATTTTGACAGAAATGGATACGGAATCGAGAAGTTTATCCGTGCCAAGTATGTGGAGAAAAGATGGGCTTTGCAAGGTGAACCACCATCAGCTCCAAAGTCAACTGAAATCTTCTTTGAGATTAAAGAGTTACCAGCTGCGGAGGCCAAGAATGGTATTCAGAAAAACAGAAGATTGTCTCTTGAGGAAAGCATTCTAGTGAATCACATGGCACAAATTCGGCCTCCAATAGCGAAATGTCACGAGGCCCCCGTAAATTTACCGATGAAGATATCACCTCCGGTTAAGAGGGCATCAGCATCACTTGATTTTGATAACGTCATTGGAAATAGCAACGGTACCATCGATCTTTTTAACTTACTTTCCATCCACGACGATAAACAGAATGACTCAACTACACCTCCTAGCTGGACAACATTTGATTGA 918 0.439 MGFPLLSLSPSPTTLSLSIIIGSTHQNKNLTTLKNSFFFYLPLSVCSSFAVVSCLSEGFAANMNGKASVSKELHAKHTKILEGLLKLPDNRECADCWTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFMGNVKSNKHWEAKLPPDFDRNGYGIEKFIRAKYVEKRWALQGEPPSAPKSTEIFFEIKELPAAEAKNGIQKNRRLSLEESILVNHMAQIRPPIAKCHEAPVNLPMKISPPVKRASASLDFDNVIGNSNGTIDLFNLLSIHDDKQNDSTTPPSWTTFD 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05854 305 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 63 305 IPR044520 GO:0005096
Vivi2g05854 305 SUPERFAMILY ArfGap/RecO-like zinc finger 77 188 IPR037278 -
Vivi2g05854 305 Gene3D Arf GTPase activating protein 59 191 IPR038508 -
Vivi2g05854 305 FunFam stromal membrane-associated protein 1 isoform X1 63 191 - -
Vivi2g05854 305 ProSiteProfiles ARF GTPase-activating proteins domain profile. 78 195 IPR001164 GO:0005096
Vivi2g05854 305 SMART arf_gap_3 67 195 IPR001164 GO:0005096
Vivi2g05854 305 CDD ArfGap 81 181 - -
Vivi2g05854 305 PRINTS HIV Rev interacting protein signature 90 109 IPR001164 GO:0005096
Vivi2g05854 305 PRINTS HIV Rev interacting protein signature 130 151 IPR001164 GO:0005096
Vivi2g05854 305 PRINTS HIV Rev interacting protein signature 109 126 IPR001164 GO:0005096
Vivi2g05854 305 Pfam Putative GTPase activating protein for Arf 79 188 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05854 Vivi-Chr2 188491208 188494541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05854 81 181 C2H2 Transcription Factor Family AT4G05330 50.467 5.05e-28 108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05854 2 188491208 188494541 Vivi2g05854 2 188491208 188494541 ECH
Vivi5g06436 5 171110462 171115954 Vivi2g05854 2 188491208 188494541 PCT