Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05850 ATGTCTTCCGCCGGCGGCAACCACAACCATCCCCCCGGCGGAAACTCCGACGAACTCCGCCAATACTTTTGCCACCAGTGCGAACGCACAGCCTTCATTTCCTCCTCCACCACCGATCTAATCTGTCCCAATTGCAACAGCACTTTCCTTGAGGAACTCGAAGCTCCAATTCCGAACCCTAACCCTAATCCCAACCCTATCCCTCCGTTCTTCTCCCACACCACCGACTTTCCCGCCGCTGGCTTCTCCTTTCCCCTCGTTTTCTCTGGAGGTGCCGCTCCTCAGCCATTCAATGATCTCTCGGCCTTGTTGTCGTCGTCGTCGTCTCCGTCTCAGCCTGCACCTTTCGGCGAGGCGTTTAACCCGGTCGCCTTTATTCAAAACTACCTGCAAAACATGAGGGCGGGAGGAGGCAATGTTCAGTTCTTCATCAACGACGGCGATGATCCGGCTCGTCAGTTCCGGTTTCCTGGTAACGCGAATCCGGGGGATTATTTCTTTGGACCGGGGCTTGAGGATCTGATCCAGCAATTGGCTGAGAACGATCCGAGTCGGCGCGGGACTCCTCCTGCGTCAAAATCTGCTGTGGAAAAACTCCCTGTTATCGAAGTTACCGGGGAGTTGCTGGAGTCCGATTCCTCGCAGTGCGCGGTGTGCAAGGACACATTTGAACTTGGTGAAAAGGCGAAGCAGATGCCATGTAAGCACATTTATCATGCTGATTGTATCTTGCCGTGGCTGGAAATGCATAATTCCTGCCCTGTTTGTCGTCATGAGTTGCCAACAGATGACCCTGATTATGAGCAGAGGGCTCGCGGCGGTGGAGGTGGTTCTGGTGCTGCTAGTGGAGATGATTCTGTGAGGAGGTTTAGGGTGTCTTTGCCGTTTATGCCATTTAGGGTACCTTCTTCTGCTGCGGGGACTAGTAATGCTGGGAATGTTGACAACAATGACAACAGCAATAGCAATAGTGAGCATTCCAATACTGAGACCAGACAAGAAGATCTCGACTGA 1014 0.5296 MSSAGGNHNHPPGGNSDELRQYFCHQCERTAFISSSTTDLICPNCNSTFLEELEAPIPNPNPNPNPIPPFFSHTTDFPAAGFSFPLVFSGGAAPQPFNDLSALLSSSSSPSQPAPFGEAFNPVAFIQNYLQNMRAGGGNVQFFINDGDDPARQFRFPGNANPGDYFFGPGLEDLIQQLAENDPSRRGTPPASKSAVEKLPVIEVTGELLESDSSQCAVCKDTFELGEKAKQMPCKHIYHADCILPWLEMHNSCPVCRHELPTDDPDYEQRARGGGGGSGAASGDDSVRRFRVSLPFMPFRVPSSAAGTSNAGNVDNNDNSNSNSEHSNTETRQEDLD 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05850 337 FunFam E3 ubiquitin-protein ligase RING1-like 177 263 - -
Vivi2g05850 337 MobiDBLite consensus disorder prediction 301 337 - -
Vivi2g05850 337 ProSiteProfiles Zinc finger RING-type profile. 216 257 IPR001841 -
Vivi2g05850 337 CDD RING-H2_RNF126-like 215 257 - -
Vivi2g05850 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 263 IPR013083 -
Vivi2g05850 337 SUPERFAMILY RING/U-box 196 263 - -
Vivi2g05850 337 SMART ring_2 216 256 IPR001841 -
Vivi2g05850 337 Pfam Ring finger domain 215 257 IPR001841 -
Vivi2g05850 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 118 261 - -
Vivi2g05850 337 MobiDBLite consensus disorder prediction 267 286 - -
Vivi2g05850 337 Pfam zinc-ribbon 21 53 IPR039525 GO:0061630
Vivi2g05850 337 MobiDBLite consensus disorder prediction 303 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05850 Vivi-Chr2 188438827 188442813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05850 174 273 C3H Transcription Factor Family AT5G15820 55.000 1.99e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05850 K11982 - qsa:O6P43_005293 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05850 2 188438827 188442813 Vivi2g05850 2 188438827 188442813 ECH