Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05846 ATGAGTTATCAATTTCGTTTAGCAAATTGGAATGAAGACGACAGTCCAACTCGTGATCGTGATGCTAGAACCTTAAGATATTTGTTGGCCTCTAATTCTCCTTCTTCGGTTGATTTTAACAATCGTAGAAGATCAACTGAAACCAATGATCAAGTTGTGCATGACAATATCATGCAAAACAATCCTCTTCATCCCACATATATTCCTCCTCTTCACCCAAACACAACAAACACTACTACTAGTCATGATACTGATTATAATCATTATCCTTCTCCTATGGTACATCCAACAACCATAAATATCAATAATTATAATTACAATCAAACTTCTCCTTCTTCTGACTCAACCCCGCCGAGACTTTTTGGTTCATATCTGACTTTACCTCCTACTACTAGAAGAAATAATGTTCAGTATATCAATACAACACGGCCACCATCATCTATGTATCCAAGTATTGCACAACTTGGATCAGCTCCATCAAATTCTCATCAAGTTCAAAGTAGAGAAAGAAATAATAATAATGGTAGTTATACTTCATTCAGTAATGGTAGAAATAACAATGATGATGCATCTGCTACTGCTACTTCAATTGGTATTGGTAATACTTCACTCAAGAGAAGTAGATCACCAGATTTTGTGAGAGGAGAGAGTTCAAATCAAGGTTCACAAGAGGATGGAACCTTAAGAAGACGCACAAATCCTCCTCCTCCTCCTACTTTTCAGCAAGAAAGTGTGAGCGATAATAACACGTCTTCAATGCCTTCGACTTCGTTATTAACGCGATACAACAACAATAATAATATCTTCTTTTCAAGAATGTTACGACAAGAAGTGAACCAATCTAGTGTCAGTGCGACACAAAATTCTCTTACAAGTGAGTCTCGCATTAACCGACATCCTGCACATGGTGGTCCAGCAGGTTTTTTTGATGATACACCATCATATAATAGCCCAAATCAATCTATCATTAATGCAGATGTTTCTCGATTCTTGTCTCCTTATCAACAAGAGACTCATCGGGCCAACTTCACCATGCTCCGAGGAAGTGAACTTGTGAATGCTTCTACCTTTGTAGCATCTTTATATCCTTCAACAATGACAAGAGGAATAACTCAGACTGTATTGAGTACATCATCTTTTCAAGGAAATAATAATTTCCTGTATACTGGAGCAAGCTCATCTTCATCCTCTCGCAGTTTAGGTGGAGGTTTTAATGGTTTCAATAATAACAACAATAACAACTTGGATTTATTTGATTCTATACATCATAGAATTGATGATATATTTGTTCATAGCACCATAAATGTTCAACAATATGTAAGGATTTTACCAGGAGGTCATGTGAGTCGATTTTTCTGTCCATCTATTGTTCCTACGTGGTCAAATAGTTTTATACCCCAACGATCACAACCGCCTTCTAATCGTTCAACAAGTAGTTACCGCCTAATCCCCCATCCACCTCCTGGACAAGAATTCAGTATTGATGTAGAATTTAATCAGTACATGCAGATGGGTACATCAATGGATAGATCAGGGAATCTTCATCTCGATAATAACCATATTCTTACCTCAGCCTCTCCCGAACTAAGGGCTCAAAGGGACATGCTTAGGGATGAGGTATTTTCACTCATACAACATCTGCGTAGTGGTGGCTCTGTGCATTTTGAAGACTTGCTGATATTGAATTATTCAATTATGTTAAATGTGCTTGATTCTCAAGAACTTATGAACATGCTACATAATATAGACAATTGGCCATATGAGGTGATTTCACGCCTCGAAGAAGACGTCGAGAGGATTGAGACAGGGCTCACTGAAGAGGAGATTCACAGATATATTGACACAGAAACTCACGTGTCAAATACAAACGAAACCAATACACAAAACAAAACCTGCACAATTTGTCAGGAAGACTATGTAGAAGGGGAAATCATTGGAAGATTGGATTGCAGACACATATATCACCTTGAATGTATTAAACAATGGTTGTTGTTGAAGAATGAATGTCCAATCTGTAAGCAGAGAGCTCTAGAAGTTGATGAAGATGAGGACGAAAGCGATTGA 2064 0.3765 MSYQFRLANWNEDDSPTRDRDARTLRYLLASNSPSSVDFNNRRRSTETNDQVVHDNIMQNNPLHPTYIPPLHPNTTNTTTSHDTDYNHYPSPMVHPTTININNYNYNQTSPSSDSTPPRLFGSYLTLPPTTRRNNVQYINTTRPPSSMYPSIAQLGSAPSNSHQVQSRERNNNNGSYTSFSNGRNNNDDASATATSIGIGNTSLKRSRSPDFVRGESSNQGSQEDGTLRRRTNPPPPPTFQQESVSDNNTSSMPSTSLLTRYNNNNNIFFSRMLRQEVNQSSVSATQNSLTSESRINRHPAHGGPAGFFDDTPSYNSPNQSIINADVSRFLSPYQQETHRANFTMLRGSELVNASTFVASLYPSTMTRGITQTVLSTSSFQGNNNFLYTGASSSSSSRSLGGGFNGFNNNNNNNLDLFDSIHHRIDDIFVHSTINVQQYVRILPGGHVSRFFCPSIVPTWSNSFIPQRSQPPSNRSTSSYRLIPHPPPGQEFSIDVEFNQYMQMGTSMDRSGNLHLDNNHILTSASPELRAQRDMLRDEVFSLIQHLRSGGSVHFEDLLILNYSIMLNVLDSQELMNMLHNIDNWPYEVISRLEEDVERIETGLTEEEIHRYIDTETHVSNTNETNTQNKTCTICQEDYVEGEIIGRLDCRHIYHLECIKQWLLLKNECPICKQRALEVDEDEDESD 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05846 687 MobiDBLite consensus disorder prediction 127 229 - -
Vivi2g05846 687 Pfam Ring finger domain 631 673 IPR001841 -
Vivi2g05846 687 ProSiteProfiles Zinc finger RING-type profile. 632 673 IPR001841 -
Vivi2g05846 687 SUPERFAMILY RING/U-box 616 678 - -
Vivi2g05846 687 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 449 677 IPR045191 GO:0061630
Vivi2g05846 687 MobiDBLite consensus disorder prediction 107 259 - -
Vivi2g05846 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 592 677 IPR013083 -
Vivi2g05846 687 SMART ring_2 632 672 IPR001841 -
Vivi2g05846 687 MobiDBLite consensus disorder prediction 242 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05846 Vivi-Chr2 188302747 188305700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05846 533 678 C3H Transcription Factor Family AT2G15530 34.868 2.61e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05846 - - vvo:131650911 1344.72