Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05776 ATGTTTTATGAAGTTTTATCTAACATCATGAGCCTGGTCATTGACTTAACCATATTATATATGGTTTTGTTCTTTCTGTCATTGAACATCGTTTTCTGTATTGAAATCGAAATCAAGGAGTTTTATCCACAAGAAAGATATGCTTTGTTACTCATAAGAGATTCATTAAATTCTTCTGTGGATTTGCATGGAAATTGGACAGGACCGCCTTGTATAAACAATATTAGTAGATGGTTTGGTATCACTTGTTCAAATTGGCATGTTGTTCATATTATAATTCAAGGTGTTAATCTGCGTGGCTATTTACCTTCAACGGTTCTTCAAAACATAACTTTCTTGAGGCGAATTGATTTCAGAAACAATGCACTTTTCGGACTATTGCCGAATCTCACAGGTTTGGTTTTCTTAGAAGAAGTGAAACATTCTTTTAATCATTTCTCGGGGTCAATTCCTTTGGAATATGTTGAGTTGCTTGGTCTTCAAGTTTTGGAGCTGCAAGAGAATTACTTAGATGGTGAAATTCCACCTTTTGATCAATCATCATTGAGAAGTTTCAATGTTTCATATAATCATTTGGTAGGGAAAATTCCTGAAACTTCTTTGCTTCAAAGGCTTCCAAAAAGTGCTTTTGATGATAATTCTGAACTTTGTGGAAAGCCATTGGATATGTCATGTCCTCCTTCTATGGAAAAAAATAAGAAAAAACTTCAAGTTTGGATTATTGCTTTGATTGCTTTTGGAGCTGGTTTGTTTCTTTTTCTGATGATTATTGCTTTCTTGTTTTGTAAAAGAAAAGCTAGAGGAAATGAAAGAAGAAGAAATGGTTCATCAAGGTATACTTTTGGAGCATGGGCATCTAATGTAGGGAATAGTGAAGATTCTGGAAGATTAGGCCAATTGGAATTTTTCGACAAGAAACTTCAAGCTTTTGACATGGATGATTTATTAAGAGCATCTGCAGAAGTTGTAGGAAGAGGAGAATTTGGTGTTACATATAAAGCAACACTTGAAACTGGCAATGTTGTTGCAGTGAAGAGACTTAGTTACATGAATGAATTGAGCAAGAAGGAATTTGTTCAGCAAATGCAATTGCTAGGACAGATAAAGCATGAAAATTTGGTGGAAATTATCTCCTTTTATCATTCAGAAGATCAAAAGCTTATCATATATGAAGTTGTCTCTGATTGCACTTTGTTTGAACTCCTACATGAGGGAAGAGGAATTGGAAGAATACCACTTGATTGGAGCACAAGGCTTTCAATTATCGAAGACATAGCAAAAGGACTTGATTTCCTTCATCAATTTTTATCTTCACACAAAGTACCTCATGCAAATCTCAAATCATCAAATGTTCTAATCCTTCAAACCAACCAAGGTTACCATTCCAAGCTCACAGACTATGGTTTCTTGTCATTACTCTCATCATCCAACAAAAATGCAGAAAAGCTATCAATAAGCAAGTCACCGGAATTCGTTAAAGGGAAAAAGCTGTCACACAAAACTGATGTATATTGTTTTGGCATCATTATGCTAGAGATTATAACTGGTAAAATTCCTGGAGGTGGCGAAGTTGAAGAAACGACGGGTAATGATCTTTCGGATTGGGTTAGAACTGTGGTGAATAATGATTGGTCTACTGATATATTGGATTTGGAAATATTGGCTGAAAGAGAAGGACATGATGCAATGTTGAGTCTTACTGAGATAGCTTTAGAGTGTACTGATTTGGTGCCTGATAAAAGGCCTAAGATGAGTGTAGTGTTGAAGAGAATTGAAGAGATGGAACAAATGATAAAAGAGAATGATTGA 1809 0.351 MFYEVLSNIMSLVIDLTILYMVLFFLSLNIVFCIEIEIKEFYPQERYALLLIRDSLNSSVDLHGNWTGPPCINNISRWFGITCSNWHVVHIIIQGVNLRGYLPSTVLQNITFLRRIDFRNNALFGLLPNLTGLVFLEEVKHSFNHFSGSIPLEYVELLGLQVLELQENYLDGEIPPFDQSSLRSFNVSYNHLVGKIPETSLLQRLPKSAFDDNSELCGKPLDMSCPPSMEKNKKKLQVWIIALIAFGAGLFLFLMIIAFLFCKRKARGNERRRNGSSRYTFGAWASNVGNSEDSGRLGQLEFFDKKLQAFDMDDLLRASAEVVGRGEFGVTYKATLETGNVVAVKRLSYMNELSKKEFVQQMQLLGQIKHENLVEIISFYHSEDQKLIIYEVVSDCTLFELLHEGRGIGRIPLDWSTRLSIIEDIAKGLDFLHQFLSSHKVPHANLKSSNVLILQTNQGYHSKLTDYGFLSLLSSSNKNAEKLSISKSPEFVKGKKLSHKTDVYCFGIIMLEIITGKIPGGGEVEETTGNDLSDWVRTVVNNDWSTDILDLEILAEREGHDAMLSLTEIALECTDLVPDKRPKMSVVLKRIEEMEQMIKEND 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05776 602 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 23 596 IPR046959 -
Vivi2g05776 602 Gene3D Transferase(Phosphotransferase) domain 1 394 602 - -
Vivi2g05776 602 Gene3D Phosphorylase Kinase; domain 1 284 391 - -
Vivi2g05776 602 SUPERFAMILY Protein kinase-like (PK-like) 321 592 IPR011009 -
Vivi2g05776 602 Pfam Protein kinase domain 321 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g05776 602 ProSiteProfiles Protein kinase domain profile. 317 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g05776 602 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Vivi2g05776 602 Gene3D Ribonuclease Inhibitor 42 227 IPR032675 -
Vivi2g05776 602 Pfam Leucine rich repeat N-terminal domain 44 84 IPR013210 -
Vivi2g05776 602 SUPERFAMILY L domain-like 42 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05776 Vivi-Chr2 187568453 187571327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05776 45 594 Receptor kinase-like Gene Family AT1G48480 34.080 2.76e-98 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi2g05776 Pkinase 6.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05776 - - gmx:102668068 830.861