Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05766 ATGGCATCATCAACCCCTCAAGTCATAACCTGCAAAGCCGCAGTGGCATGGGGAGCTGGTGAGGCATTGGTACTGGAGGAAGTGGAAGTCAGTCCTCCCCAACCATTCGAGATTAGGATTAAGGTTGTTTCCACCTCTCTATGTCGTAGTGATCTTTCTGCTTGGGAATCCCATGCTATATTTCCTCGCATATTTGGCCATGAAGCATCTGGGGTTGTTGAGAGTGTAGGGCTAGGAGTGACTGAATTCAAACAAGGGGACCATGTGCTAACAGTTTTCATAGGAGAATGCATGTCATGCAAGCCGTGCAAATCGGGAAAAAGTAATATTTGTCAAGTTTTGGGATTGGAAAGAAAGGGTTTAATGCATAGTGATCAAAAGACAAGATTCTCAATAAAAGGGAAGCCTGTTTATCATTATTGTGGTGTTTCGAGTTTTAGCGAATATACAGTTGTCCATTCTGGATGTGCAGTGAAAGTTAGTCCTCATGTACCTCTCGACAAAATATGCATTCTAAGCTGTGGCGTCTCTGCAGGTCTGGGTGCAGCATGGAATGTTGCCGATGTTACAAAAGGATCAACAGTGGTTATATTTGGTCTCGGAACTGTTGGCCTTTCCGTTGCTCAAGGTGCTAAAATAAGAGGTGCATCTAGAATAATTGGTGTTGACAACAACCCAAAGAAGTGTGAAAATGCTAAATCTTTTGGGGTTACAGAAGTTGTTGATCCGAATTTGTACAAAGAGCCTATTGTGCAGGTTATTAAGCGCATTACTGATGGTGGAGCAGATTTTTGTTTTGAATGTGTCGGTAACACTGATATGATAACAACTGCATTGCAATCATGTTGTGATGGATCGGGTTTGACTGTAACACTTGGTGTGCCGAAGGTGAAGCCGGAGATGTCGGCTCATTATGGATTATTCTTGACAGGAAGAACATTAAAAGGATCTCTATTTGGAGGATGGAAACCTAAAACTGATCTTCCTTCACTAGTAGAAAAATATATGAACAAGGAAATTCAGATTGATGACTACATAACACACAATCTGACATTTGATGACATTAATAAAGCTTTCAATCTCATGAATGAAGGAAAGTGTCTTCGTTGTGTTATCCACATGCCATGA 1128 0.414 MASSTPQVITCKAAVAWGAGEALVLEEVEVSPPQPFEIRIKVVSTSLCRSDLSAWESHAIFPRIFGHEASGVVESVGLGVTEFKQGDHVLTVFIGECMSCKPCKSGKSNICQVLGLERKGLMHSDQKTRFSIKGKPVYHYCGVSSFSEYTVVHSGCAVKVSPHVPLDKICILSCGVSAGLGAAWNVADVTKGSTVVIFGLGTVGLSVAQGAKIRGASRIIGVDNNPKKCENAKSFGVTEVVDPNLYKEPIVQVIKRITDGGADFCFECVGNTDMITTALQSCCDGSGLTVTLGVPKVKPEMSAHYGLFLTGRTLKGSLFGGWKPKTDLPSLVEKYMNKEIQIDDYITHNLTFDDINKAFNLMNEGKCLRCVIHMP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05766 375 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 317 - -
Vivi2g05766 375 SUPERFAMILY GroES-like 5 184 IPR011032 -
Vivi2g05766 375 Gene3D - 14 369 - -
Vivi2g05766 375 SUPERFAMILY GroES-like 325 373 IPR011032 -
Vivi2g05766 375 Pfam Zinc-binding dehydrogenase 203 324 IPR013149 -
Vivi2g05766 375 Pfam Alcohol dehydrogenase GroES-like domain 37 159 IPR013154 -
Vivi2g05766 375 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Vivi2g05766 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 338 IPR036291 -
Vivi2g05766 375 FunFam Alcohol dehydrogenase 6 14 194 - -
Vivi2g05766 375 PANTHER ALCOHOL DEHYDROGENASE 7 372 - -
Vivi2g05766 375 Gene3D - 179 317 - -
Vivi2g05766 375 CDD alcohol_DH_plants 9 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05766 Vivi-Chr2 187470313 187473261 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05766 37 175 Monolignol Biosynthesis Gene Families AT4G37990 27.273 2.65e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05766 K00001 - gmx:100819938 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05766 2 187470313 187473261 Vivi2g05766 2 187470313 187473261 ECH