Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05728 ATGGCAACTAGACTTCAGTTTGAGAATAATTGTGATATTGGAGCTTTCTCTAAACTTACAAATGCATATTGTATGGTTGCCATTGGAGGTTCTGAAGGCTTCTACAGTGTATTTGAATCTGAGCTATCTGGTGTTATCCCTGTTGTAAAGACATCTGTTGCTGGCACCCGCATTGTTGGTCGTCTTTGTGCTGGAAACAAGAACGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAACTTCAACATTTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGAGGATAGAAGAAAAACTATCTGCTCTGGGGAATTGTATTGCATGTAATGACCACGTGGCCCTCACTCACACTGATCTCGACAGGGAAACCGAGGAGATAATCGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAAACCATTGCTGGTAACATTCTTGTTGGTAGTTTCTGTGCCCTCTCCAATAGTGGTGGTTTGGTCCACCCTCACACTTCCGTAGAAGACTTGGATGAACTTTCTACTCTACTTCAAATTCCTTTGGTTGCCGGAACTGTGAACCGAGGTAGTGAAGTGATAGGTGCTGGAATGATAGTAAACGATTGGACAGCATTTTGTGGTTCAGACACTACAGCAACAGAGCTTTCTGTAATTGAGAATGTTTTCATGCTGAGGGACTCAAAGCCTAGTGTCATTGTCAATGAGATGAGGAAATCCCTCATTGACAGCTATGTTTGA 738 0.4322 MATRLQFENNCDIGAFSKLTNAYCMVAIGGSEGFYSVFESELSGVIPVVKTSVAGTRIVGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEEKLSALGNCIACNDHVALTHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSFCALSNSGGLVHPHTSVEDLDELSTLLQIPLVAGTVNRGSEVIGAGMIVNDWTAFCGSDTTATELSVIENVFMLRDSKPSVIVNEMRKSLIDSYV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05728 245 FunFam Eukaryotic translation initiation factor 6 1 225 - -
Vivi2g05728 245 SUPERFAMILY Pentein 1 223 - -
Vivi2g05728 245 NCBIfam translation initiation factor IF-6 4 223 IPR002769 GO:0042256|GO:0043022
Vivi2g05728 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Vivi2g05728 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Vivi2g05728 245 Gene3D - 1 224 - -
Vivi2g05728 245 CDD IF6 2 222 IPR002769 GO:0042256|GO:0043022
Vivi2g05728 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Vivi2g05728 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 244 IPR002769 GO:0042256|GO:0043022
Vivi2g05728 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Vivi2g05728 245 Coils Coil 241 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05728 Vivi-Chr2 186114555 186118647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05728 1 245 Eukaryotic Initiation Factors Gene Family AT3G55620 85.306 5.67e-163 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05728 K03264 - gmx:100800352 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05728 2 186114555 186118647 Vivi1g06060 1 135040665 135043456 PCT