Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05727 ATGTCGAAACAAAGATATTTTGAGGCGTTTCTAGTATATGCCGGTTTGAATATGAGTTTAGCAGCAGCGGCTGCAGCTCTTTGTGCTTTCATTGCTCCGTCAGCAGCAGGCTCTGGCATTCCGGAGGTTAAAGCATATCTCAACGGCATCGATGCTCACTCGATTCTGGCTCCAAGCACTCTTTTTGTAAAGATTTTTGGTTCCATCTTTGGAGTATCTGCTGGATTTGTGTTGGGAAAAGAAGGACCTATGGTTCATACTGGAGCATGCATAGCTTCTATTTTGGGGCAAGGCGGGTCTAAAAAGTACGGTTTGACTTGGAGTTGGCTTAGGTATTTCAAAAATGACCGAGACCGGCGAGACATGATTACTTGTGGTGCTGCTGCTGGTGTTGCGGCCGCCTTTCGATCTCCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCTTGGTGGAGGAGTGCTCTACTTTGGAGGGCATTTTTTACTACAGCAGTAGTTGCTATTGTTCTAAGAGGCGGAATTCAATTTTGTTCGACCGGGAAATGTGGACTATTTGGCGAAGGTGGTCTTATATTGTATGATGTTAGTTCGGCCAAAGTAACCTATAGTGGCGGCGACATTTTAGCAGTAATAGTGTTGGCGACTATTGCTGGTATTCTTGGAAGCATTTATAATTTCCTCGTCGACAAGGTCGTTCGTTCATATAGCATCATCAATGAAAAGGGTCCATTTTTCAAAATCTCTCTTGTAATTACAGTTTCTCTTTTAACATCATGTTGTTATTATTTCCTACCATGGATTGGAAACTGCATCCCTTGTCCTATTGAAGGGACGGTGGCCTGTCCCTCAATTGACGAGTCGGGAGAATACAAAATCTTCCAATGTCCGCCGGGCCACTACAACGATCTTGCTTCCCTCTTTCTAAACACCAACGACGATGCTATTCGTAATCTATTCAGTCCTAAGATAAACAAAGAGTTTCACATTTCAAGTTTGTTTATCTTCTTTGCAGCTGTTTACTTTCTCGGTATAATCACATATGGCATCGCTGTTCCGTCTGGACTTTTCATCCCGGTGATACTTGCTGGTGCTGCGTACGGCCGTGTTATCAGTAGACTCTTTGAACCAATCACCAAACTCGACCGAGGTCTCTTTTCTCTCCTAGGAGCAGCCTCTTTCCTCGGTGGTACAATGAGAATGACAGTCTCGATTTGTGTTATATTACTCGAACTCACTAATGATCTCTTGTTACTTCCACTCGTCATGGTGGCATTATTAATCTCGAAATCCGTGGCCGATATTTTCAACAAAGGTGTCTATGATCAAATATTGAAGATCAAAGGACTTCCTTATTTAGAAGCGCACGCCGAAGCATACATGAGGAATATAGCTACACGCGATGTTGTCTCGGGTCCATTAATGTCCTTTTCTGGCATCGAAACGGTCGGGAACATTTTACATGTTCTGAACACTACAGGACACAACGGGTTTCCGGTCATCGACGAACCGCCTTTCACAGACTCGCCAGAGTTGTGTGGACTCGTGCTAAGGTCTTACTTACTAGTTTTACTAAAGGCGAAGAATTTTACAAGAGAGAGGGTTTTCGCAAACGCGAGTATCTTAGAAAATATTTCCGTGCTGGATTTTGGAAAGGCGGGATCGGGAAAAGGAGTCAAATTAGAGGATTTAGATATCGAAGACGAAGATTTGAACATGTACGTTGATCTTCATCCAATAACCAATACATCACCGTACACTGTGGTTGAGACGATGTCACTTGCTAAAGCCGCTATTATTTTCCGTCAACAAGGACTCAGGCACATGTGTGTTGTTCCGAAGAGCCAAGAGAGACCTCCGATAGTCGGGATTCTGACGCGCCACGATTTCATGCCGGAACATGTTTTGGGACTTTACCCTGATATCAAGCATCACAAATGGCACTGA 1950 0.441 MSKQRYFEAFLVYAGLNMSLAAAAAALCAFIAPSAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVSAGFVLGKEGPMVHTGACIASILGQGGSKKYGLTWSWLRYFKNDRDRRDMITCGAAAGVAAAFRSPVGGVLFALEEAASWWRSALLWRAFFTTAVVAIVLRGGIQFCSTGKCGLFGEGGLILYDVSSAKVTYSGGDILAVIVLATIAGILGSIYNFLVDKVVRSYSIINEKGPFFKISLVITVSLLTSCCYYFLPWIGNCIPCPIEGTVACPSIDESGEYKIFQCPPGHYNDLASLFLNTNDDAIRNLFSPKINKEFHISSLFIFFAAVYFLGIITYGIAVPSGLFIPVILAGAAYGRVISRLFEPITKLDRGLFSLLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMVALLISKSVADIFNKGVYDQILKIKGLPYLEAHAEAYMRNIATRDVVSGPLMSFSGIETVGNILHVLNTTGHNGFPVIDEPPFTDSPELCGLVLRSYLLVLLKAKNFTRERVFANASILENISVLDFGKAGSGKGVKLEDLDIEDEDLNMYVDLHPITNTSPYTVVETMSLAKAAIIFRQQGLRHMCVVPKSQERPPIVGILTRHDFMPEHVLGLYPDIKHHKWH 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05727 649 Gene3D - 455 633 IPR046342 -
Vivi2g05727 649 Pfam Voltage gated chloride channel 21 435 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g05727 649 PRINTS Chloride channel signature 128 147 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g05727 649 PRINTS Chloride channel signature 33 50 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g05727 649 PRINTS Chloride channel signature 441 455 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g05727 649 PRINTS Chloride channel signature 64 83 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g05727 649 PRINTS Chloride channel signature 385 401 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g05727 649 PRINTS Chloride channel signature 353 373 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g05727 649 PRINTS Chloride channel signature 403 422 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g05727 649 ProSiteProfiles CBS domain profile. 581 643 IPR000644 -
Vivi2g05727 649 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 5 637 - -
Vivi2g05727 649 SUPERFAMILY CBS-domain pair 458 632 IPR046342 -
Vivi2g05727 649 CDD CBS_pair_voltage-gated_CLC_euk_bac 468 634 - -
Vivi2g05727 649 Pfam CBS domain 583 631 IPR000644 -
Vivi2g05727 649 SUPERFAMILY Clc chloride channel 6 457 IPR014743 -
Vivi2g05727 649 PRINTS Plant CLC chloride channel signature 305 321 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi2g05727 649 PRINTS Plant CLC chloride channel signature 149 157 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi2g05727 649 PRINTS Plant CLC chloride channel signature 181 188 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi2g05727 649 PRINTS Plant CLC chloride channel signature 163 173 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi2g05727 649 Gene3D Clc chloride channel 1 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05727 Vivi-Chr2 186103748 186107363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05727 1 647 Ion Channels AT5G49890 72.769 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05727 K05016 - gmx:100777170 1049.27