Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05725 ATGGTTTTGTTCTTAGTTAAAAACGGTACCGGATTTGAGGTTCCTGTGACATCATCGGACGAAGTTACCGAGAAGATGGAGAAAGAAGAAAATGTAAACCATGGTGATGATGTGCTTGATATAGAAAATGATGGTAGCTTTGATGGAAATGGCGAAGAAATCAGAAGATATTGGTCACAGTTTTCTGAGAGGAACATGACATATGAAGAACCTCTTCTTGTGAAGAGGATTAATACTACCTCTCAGATTGCCATAGTCGGTTCCAACCTTTGCCCTATCGAAAGTCTCGATTATGAGATTTTTGATAGTGAAATATTTAACCAGGACTGGAGGTCCAGGAAGAAGGTTCAGATATTCCAATACGTCGTACTTAAATGGGTATTTGCTCTTCTCATTGGATTAGGAACCGGATTGGTTGGTCTTTTCAATAACGTTGCTGTCGAGAACATAGCTGGTTTCAAGCTTCTTCTTACAACTAGTCTCATGTCGAAACAAAGATATTTTGAGGCGTTTCTAGTATATGCCGGTTTGAATATGAGTTTAGCAGCAGCGGCTGCAGCTCTTTGTGCTTTCATTGCTCCGTCAGCAGCAGGCTCTGGCATTCCGGAGGTTAAAGCATATCTCAACGGCATCGATGCTCACTCGATTCTGGCTCCAAGCACTCTTTTTGTAAAGATTTTTGGTTCCATCTTTGGAGTATCTGCTGGATTTGTGTTGGGAAAAGAAGGACCTATGGTTCATACTGGAGCATGCATAGCTTCTATTTTGGGGCAAGGCGGGTCTAAAAAGTACGGTTTGACTTGGAGTTGGCTTAGGTATTTCAAAAATGACCGAGACCGGCGAGACATGATTACTTGTGGTGCTGCTGCTGGTGTTGCGGCCGCCTTTCGATCTCCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCTTGGTGGAGGAGTGCTCTACTTTGGAGGGCATTTTTTACTACAGCAGTAGTTGCTATTGTTCTAAGAGGCGGAATTCAATTTTGTTCGACCGGGAAATGTGGACTATTTGGCGAAGGTGGTCTTATATTGTATGATGTTAGTTCGGCCAAAGTAACCTATAGTGGCGGCGACATTTTAGCAGTAATAGTGTTGGCGACTATTGCTGGTATTCTTGGAAGCATTTATAATTTCCTCGTCGACAAGGTCGTTCGTTCATATAGCATCATCAATGAAAAGGGTCCATTTTTCAAAATCTCTCTTGTAATTACAGTTTCTCTTTTAACATCATGTTGTTATTATTTCCTACCATGGATTGGAAACTGCATCCCTTGTCCTATTGAAGGGACGGTGGCCTGTCCCTCAATTGACGAGTCGGGAGAATACAAAATCTTCCAATGTCCGCCGGGCCACTACAACGATCTTGCTTCCCTCTTTCTAAACACCAACGACGATGCTATTCGTAATCTATTCAGTCCTAAGATAAACAAAGAGTTTCACATTTCAAGTTTGTTTATCTTCTTTGCAGCTGTTTACTTTCTCGGTATAATCACATATGGCATCGCTGTTCCGTCTGGACTTTTCATCCCGGTGATACTTGCTGGTGCTGCGTACGGCCGTGTTATCAGTAGACTCTTTGAACCAATCACCAAACTCGACCGAGGTCTCTTTTCTCTCCTAGGAGCAGCCTCTTTCCTCGGTGGTACAATGAGAATGACAGTCTCGATTTGTGTTATATTACTCGAACTCACTAATGATCTCTTGTTACTTCCACTCGTCATGGTGGCATTATTAATCTCGAAATCCGTGGCCGATATTTTCAACAAAGGTGTCTATGATCAAATATTGAAGATCAAAGGACTTCCTTATTTAGAAGCGCACGCCGAAGCATACATGAGGAATATAGCTACACGCGATGTTGTCTCGGGTCCATTAATGTCCTTTTCTGGCATCGAAACGGTCGGGAACATTTTACATGTTCTGAACACTACAGGACACAACGGGTTTCCGGTCATCGACGAACCGCCTTTCACAGACTCGCCAGAGTTGTGTGGACTCGTGCTAAGGTCTTACTTACTAGTTTTACTAAAGGCGAAGAATTTTACAAGAGAGAGGGTTTTCGCAAACGCGAGTATCTTAGAAAATATTTCCGTGCTGGATTTTGGAAAGGCGGGATCGGGAAAAGGAGTCAAATTAGAGGATTTAGATATCGAAGACGAAGATTTGAACATGTACGTTGATCTTCATCCAATAACCAATACATCACCGTACACTGTGGTTGAGACGATGTCACTTGCTAAAGCCGCTATTATTTTCCGTCAACAAGGACTCAGGCACATGTGTGTTGTTCCGAAGAGCCAAGAGAGACCTCCGATAGTCGGGATTCTGACGCGCCACGATTTCATGCCGGAACATGTTTTGGGACTTTACCCTGATATCAAGCATCACAAATGGCACTGA 2433 0.432 MVLFLVKNGTGFEVPVTSSDEVTEKMEKEENVNHGDDVLDIENDGSFDGNGEEIRRYWSQFSERNMTYEEPLLVKRINTTSQIAIVGSNLCPIESLDYEIFDSEIFNQDWRSRKKVQIFQYVVLKWVFALLIGLGTGLVGLFNNVAVENIAGFKLLLTTSLMSKQRYFEAFLVYAGLNMSLAAAAAALCAFIAPSAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVSAGFVLGKEGPMVHTGACIASILGQGGSKKYGLTWSWLRYFKNDRDRRDMITCGAAAGVAAAFRSPVGGVLFALEEAASWWRSALLWRAFFTTAVVAIVLRGGIQFCSTGKCGLFGEGGLILYDVSSAKVTYSGGDILAVIVLATIAGILGSIYNFLVDKVVRSYSIINEKGPFFKISLVITVSLLTSCCYYFLPWIGNCIPCPIEGTVACPSIDESGEYKIFQCPPGHYNDLASLFLNTNDDAIRNLFSPKINKEFHISSLFIFFAAVYFLGIITYGIAVPSGLFIPVILAGAAYGRVISRLFEPITKLDRGLFSLLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMVALLISKSVADIFNKGVYDQILKIKGLPYLEAHAEAYMRNIATRDVVSGPLMSFSGIETVGNILHVLNTTGHNGFPVIDEPPFTDSPELCGLVLRSYLLVLLKAKNFTRERVFANASILENISVLDFGKAGSGKGVKLEDLDIEDEDLNMYVDLHPITNTSPYTVVETMSLAKAAIIFRQQGLRHMCVVPKSQERPPIVGILTRHDFMPEHVLGLYPDIKHHKWH 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05725 810 Gene3D Clc chloride channel 117 615 - -
Vivi2g05725 810 ProSiteProfiles CBS domain profile. 742 804 IPR000644 -
Vivi2g05725 810 PRINTS Plant CLC chloride channel signature 310 318 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi2g05725 810 PRINTS Plant CLC chloride channel signature 466 482 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi2g05725 810 PRINTS Plant CLC chloride channel signature 99 107 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi2g05725 810 PRINTS Plant CLC chloride channel signature 324 334 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi2g05725 810 PRINTS Plant CLC chloride channel signature 342 349 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi2g05725 810 PRINTS Chloride channel signature 602 616 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g05725 810 PRINTS Chloride channel signature 514 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g05725 810 PRINTS Chloride channel signature 546 562 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g05725 810 PRINTS Chloride channel signature 564 583 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g05725 810 PRINTS Chloride channel signature 225 244 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g05725 810 PRINTS Chloride channel signature 194 211 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g05725 810 PRINTS Chloride channel signature 289 308 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g05725 810 Pfam CBS domain 744 792 IPR000644 -
Vivi2g05725 810 CDD ClC_6_like 94 615 - -
Vivi2g05725 810 SUPERFAMILY Clc chloride channel 106 618 IPR014743 -
Vivi2g05725 810 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 53 798 - -
Vivi2g05725 810 CDD CBS_pair_voltage-gated_CLC_euk_bac 629 795 - -
Vivi2g05725 810 FunFam Chloride channel ClC3 117 432 - -
Vivi2g05725 810 SUPERFAMILY CBS-domain pair 619 793 IPR046342 -
Vivi2g05725 810 Gene3D - 616 794 IPR046342 -
Vivi2g05725 810 Pfam Voltage gated chloride channel 182 596 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05725 Vivi-Chr2 186103748 186108593 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05725 33 808 Ion Channels AT5G49890 70.000 0.0 1087
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05725 K05016 - gmx:100809070 1225.69