Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05708 ATGCCCATCATGAAAAAGAATTCTGAGCAAAATCGTTTTGAAGCTGTATTCAACAAGCTGCTGAGCCAGATTGGGGAACCTGTTGACTTTGAACTTCCAGATTGGATTAAGATAAGGACATCACAATACACCCATATAAAGCGCAATATATATGTAACTAAGAAGAACAAGAGAAAGTTTGACGATGGCATATTCTGCTCCTGCGAATCTTCACCTGACTCTACTAGTGTATGTGGTAGAGATTGTCAATGTGGGATGCTGCTGTCATGCTGTTCTTCCGGCTGCAAATGTGGGGTCTCGTGTCTCAACAAAGCTTTTCAGCATCGCCCTGTGAAAAAGCTGAAATTGGTTAAGACTGAGAAATGTGGCTCCGGAATTGTGGCGGATGAAGATATCAAGCTTGGAGAGTTTGTCATTGAATATGTTGGCGAAGTCATCGATGATAAAACATGCGAAGAAAGGCTCTGGAATATGAAAGATCGCGGGGAAACAAACTTTTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCAAGATATATCAATCATAGTTGCTGCCCGAATACCGAGATGCAGAAATGGATAATAGAAGGTGAAACAAGAATCGGTATATTTGCAGCTCGTGACATAGAGAAGGGCGAGCATCTGACTTATGACTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGAGCTACTCAGTGTAGGCGTAAGCTGGGTGCGCGGCCTACCAAGCCTAAGATGTCTTCAGATGCTGCATTAAAATTAGTTGCATATCAGGTTTGTCAGAATGGAGGCTTGCAAATTGGTCAAATTGGAAGTTCCCGGGTGATTGACCAAACAAAATGCTTACTCAATTGCGTTGATGAAGTTATCATGATTAAAAAACTTGGAAATGTCAGATTTGGGATTATTAAATGGTTTGATGCATTTACCCGCAGACATAAGATCATGTTTGAGGATGGTTGTGTTGAAATTCATGACATGTCAAAAGAAGATTGGGAACTAGTGAGGTTGTGA 1053 0.4074 MPIMKKNSEQNRFEAVFNKLLSQIGEPVDFELPDWIKIRTSQYTHIKRNIYVTKKNKRKFDDGIFCSCESSPDSTSVCGRDCQCGMLLSCCSSGCKCGVSCLNKAFQHRPVKKLKLVKTEKCGSGIVADEDIKLGEFVIEYVGEVIDDKTCEERLWNMKDRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIEGETRIGIFAARDIEKGEHLTYDYQFVQFGADQDCHCGATQCRRKLGARPTKPKMSSDAALKLVAYQVCQNGGLQIGQIGSSRVIDQTKCLLNCVDEVIMIKKLGNVRFGIIKWFDAFTRRHKIMFEDGCVEIHDMSKEDWELVRL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05708 350 SUPERFAMILY SET domain 37 241 IPR046341 -
Vivi2g05708 350 SMART shorttest3 61 111 IPR006560 GO:0005634|GO:0042054
Vivi2g05708 350 Gene3D SET domain 30 267 IPR046341 -
Vivi2g05708 350 CDD SET_ASHR3-like 113 251 - -
Vivi2g05708 350 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 37 290 IPR025787 -
Vivi2g05708 350 ProSiteProfiles SET domain profile. 112 229 IPR001214 GO:0005515
Vivi2g05708 350 PANTHER SET DOMAIN PROTEINS 8 266 - -
Vivi2g05708 350 ProSiteProfiles Post-SET domain profile. 235 251 IPR003616 -
Vivi2g05708 350 Pfam SET domain 123 228 IPR001214 GO:0005515
Vivi2g05708 350 ProSiteProfiles AWS domain profile. 61 110 IPR006560 GO:0005634|GO:0042054
Vivi2g05708 350 SMART set_7 112 235 IPR001214 GO:0005515
Vivi2g05708 350 FunFam Histone-lysine N-methyltransferase 30 267 - -
Vivi2g05708 350 SMART PostSET_3 235 251 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05708 Vivi-Chr2 185870970 185879713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05708 91 247 C2H2 Transcription Factor Family AT2G23740 36.723 5.99e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi2g05708 SET 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05708 - - gmx:100808183 579.711