Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi2g05708 | ATGCCCATCATGAAAAAGAATTCTGAGCAAAATCGTTTTGAAGCTGTATTCAACAAGCTGCTGAGCCAGATTGGGGAACCTGTTGACTTTGAACTTCCAGATTGGATTAAGATAAGGACATCACAATACACCCATATAAAGCGCAATATATATGTAACTAAGAAGAACAAGAGAAAGTTTGACGATGGCATATTCTGCTCCTGCGAATCTTCACCTGACTCTACTAGTGTATGTGGTAGAGATTGTCAATGTGGGATGCTGCTGTCATGCTGTTCTTCCGGCTGCAAATGTGGGGTCTCGTGTCTCAACAAAGCTTTTCAGCATCGCCCTGTGAAAAAGCTGAAATTGGTTAAGACTGAGAAATGTGGCTCCGGAATTGTGGCGGATGAAGATATCAAGCTTGGAGAGTTTGTCATTGAATATGTTGGCGAAGTCATCGATGATAAAACATGCGAAGAAAGGCTCTGGAATATGAAAGATCGCGGGGAAACAAACTTTTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCAAGATATATCAATCATAGTTGCTGCCCGAATACCGAGATGCAGAAATGGATAATAGAAGGTGAAACAAGAATCGGTATATTTGCAGCTCGTGACATAGAGAAGGGCGAGCATCTGACTTATGACTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGAGCTACTCAGTGTAGGCGTAAGCTGGGTGCGCGGCCTACCAAGCCTAAGATGTCTTCAGATGCTGCATTAAAATTAGTTGCATATCAGGTTTGTCAGAATGGAGGCTTGCAAATTGGTCAAATTGGAAGTTCCCGGGTGATTGACCAAACAAAATGCTTACTCAATTGCGTTGATGAAGTTATCATGATTAAAAAACTTGGAAATGTCAGATTTGGGATTATTAAATGGTTTGATGCATTTACCCGCAGACATAAGATCATGTTTGAGGATGGTTGTGTTGAAATTCATGACATGTCAAAAGAAGATTGGGAACTAGTGAGGTTGTGA | 1053 | 0.4074 | MPIMKKNSEQNRFEAVFNKLLSQIGEPVDFELPDWIKIRTSQYTHIKRNIYVTKKNKRKFDDGIFCSCESSPDSTSVCGRDCQCGMLLSCCSSGCKCGVSCLNKAFQHRPVKKLKLVKTEKCGSGIVADEDIKLGEFVIEYVGEVIDDKTCEERLWNMKDRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIEGETRIGIFAARDIEKGEHLTYDYQFVQFGADQDCHCGATQCRRKLGARPTKPKMSSDAALKLVAYQVCQNGGLQIGQIGSSRVIDQTKCLLNCVDEVIMIKKLGNVRFGIIKWFDAFTRRHKIMFEDGCVEIHDMSKEDWELVRL | 350 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi2g05708 | 350 | SUPERFAMILY | SET domain | 37 | 241 | IPR046341 | - | |
Vivi2g05708 | 350 | SMART | shorttest3 | 61 | 111 | IPR006560 | GO:0005634|GO:0042054 | |
Vivi2g05708 | 350 | Gene3D | SET domain | 30 | 267 | IPR046341 | - | |
Vivi2g05708 | 350 | CDD | SET_ASHR3-like | 113 | 251 | - | - | |
Vivi2g05708 | 350 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 37 | 290 | IPR025787 | - | |
Vivi2g05708 | 350 | ProSiteProfiles | SET domain profile. | 112 | 229 | IPR001214 | GO:0005515 | |
Vivi2g05708 | 350 | PANTHER | SET DOMAIN PROTEINS | 8 | 266 | - | - | |
Vivi2g05708 | 350 | ProSiteProfiles | Post-SET domain profile. | 235 | 251 | IPR003616 | - | |
Vivi2g05708 | 350 | Pfam | SET domain | 123 | 228 | IPR001214 | GO:0005515 | |
Vivi2g05708 | 350 | ProSiteProfiles | AWS domain profile. | 61 | 110 | IPR006560 | GO:0005634|GO:0042054 | |
Vivi2g05708 | 350 | SMART | set_7 | 112 | 235 | IPR001214 | GO:0005515 | |
Vivi2g05708 | 350 | FunFam | Histone-lysine N-methyltransferase | 30 | 267 | - | - | |
Vivi2g05708 | 350 | SMART | PostSET_3 | 235 | 251 | IPR003616 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi2g05708 | Vivi-Chr2 | 185870970 | 185879713 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi2g05708 | 91 | 247 | C2H2 Transcription Factor Family | AT2G23740 | 36.723 | 5.99e-24 | 101 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SET | Vivi2g05708 | SET | 1.6e-18 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi2g05708 | - | - | gmx:100808183 | 579.711 |