Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05652 ATGGAAGAAAGAGAGATTTTTGGTTCTGGGCATGGTGTGAATGTTAATCAGGTCCCACAGGGGTTCAACCTGGGTCAAAATCAGAATTCGTTGAGTTTTTCTGGGCCCACTGGTGAGGCTCCGGCTACTGTTCCGGTGAGTGCACCGGTTGGTGGTGGTATGGAGGTGAAGAAGAAGAGGGGTAGGCCTAGGAAGACTGAATCTGGAAGTAAACCGGCGCTGTCTCCGATGCCGATTTCGGCGTCGATTCCGTTGACTGGAGATTTCTCTGGGTGGAAAAGTGGTGGAGGGAAGCCTTTTGAATCAATCAAGAAGCCTCTGAAGTTAAATGATTTTGATGAAGATGATAGAACAGCTCCACCTAGTTCCAATTTCAAAACTCATGTGCTTACCGTAAATTCCGGAGAGGATCTCTCTATGAAAATAATGTCTCTTTCTCAACAAGAGAATCATACTATATCTATTCTCACGGCAACTGGCACAATTTCGAATGTCACACTTCGCCAGTCGGATGCTTGTGGAGGTACTTCGACATATGAGGGAGTTTTTGAGATTCTTTCCTTGAGCGGATCATTTGTGCCAACCGAGAATGGATTGACAAAGAGCAGAGCTGGAAGAATGAGTGTCTCTCTGGCAGGTCCAAATGGCCGTGTTTTCGGGGGCGCGCTCGCTGGTTTGCTGGTAGCTGCTGGTTCTGTGCAGGTTGTGGTTGCGAGTTTCCTTCCGGATCATCAGAAACCGAAGAAGCAACGTATCGATCATATGTCACCAACCGCCCCTCCTACATCAACTCATATTAACAATCATGCATCTGATGAATTGAAAACCGATCTCGGTGGAATGAAGCCTATCATGTCACCGGCCGGCTTTAACTTCGCTACATTCGGTAATGGCCAGGGCTCTGGCAACTCATCATCATCTGGCGATGATGACGAGCATGTCCAACCCTAG 951 0.4784 MEEREIFGSGHGVNVNQVPQGFNLGQNQNSLSFSGPTGEAPATVPVSAPVGGGMEVKKKRGRPRKTESGSKPALSPMPISASIPLTGDFSGWKSGGGKPFESIKKPLKLNDFDEDDRTAPPSSNFKTHVLTVNSGEDLSMKIMSLSQQENHTISILTATGTISNVTLRQSDACGGTSTYEGVFEILSLSGSFVPTENGLTKSRAGRMSVSLAGPNGRVFGGALAGLLVAAGSVQVVVASFLPDHQKPKKQRIDHMSPTAPPTSTHINNHASDELKTDLGGMKPIMSPAGFNFATFGNGQGSGNSSSSGDDDEHVQP 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05652 316 MobiDBLite consensus disorder prediction 245 316 - -
Vivi2g05652 316 ProSiteProfiles PPC domain profile profile. 121 262 IPR005175 -
Vivi2g05652 316 Pfam Plants and Prokaryotes Conserved (PCC) domain 126 240 IPR005175 -
Vivi2g05652 316 MobiDBLite consensus disorder prediction 1 80 - -
Vivi2g05652 316 MobiDBLite consensus disorder prediction 292 316 - -
Vivi2g05652 316 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 38 299 IPR039605 GO:0003680
Vivi2g05652 316 SUPERFAMILY AF0104/ALDC/Ptd012-like 123 243 - -
Vivi2g05652 316 Gene3D - 126 255 - -
Vivi2g05652 316 MobiDBLite consensus disorder prediction 13 37 - -
Vivi2g05652 316 CDD DUF296 126 240 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05652 Vivi-Chr2 184719849 184723314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05652 56 251 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 55.140 2.04e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05652 - - mtr:11422923 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05652 2 184719849 184723314 Vivi1g06088 1 135577438 135581042 ECH
Vivi2g05652 2 184719849 184723314 Vivi2g05652 2 184719849 184723314 ECH
Vivi2g05652 2 184719849 184723314 Vivi1g06088 1 135577438 135581042 PCT