Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05624 ATGGTTCCTTCAATCCCCATCACCGACGAAGCCGTAGCCGTTTCAATCGACAGCCCTAAATCAAAATCAATGAAGAAGAAGAAGGAGAAGCTCCCAACCGACGTCGTTTCAGACGAAGAAACGGCGAAGAAGAAGAGTTCGAAGAAGAGGAAGAAGAGTTCAGACGATGACGAAGAAGTGAAGAATGAAACTGGCTCTGAAGTTAAGAAGGAGAAGAAGAAGAAGAAATCGAAGGTTGAAGATGAGGATGTTGTTGAAGAAGTTGTTATGAAGAAGGATGATCCGAATGCGGTTTCGAATTTTAGAATTTCGGAACCGTTGAAGATGAAGCTGAAAGAGAAGGGGATTGAGGCTTTGTTTCCGATTCAGGCTATGACTTTTAATACTATTCTTGATGGTTCTGATTTGGTTGGGCGTGCTCGTACTGGTCAGGGAAAAACTCTTGCATTTGTTTTGCCTATATTGGAGTCACTGACTAATGGGCCGGCTAAATCTGTTAGAAAGACTGGCTATGGGAGAGTTCCAAGTGTTCTTGTGCTTTTACCTACCAGGGAATTGGCCAATCAGGTGTTTGCTGACTTTGAAGTATATGGTTCGTCCTTGGGATTGGCTGCTTGCGCTGTATATGGTGGAGCTCCGTATGGAGCACAGGAGGGTAAGCTCCGTAGAGGTGTTGATGTTGTTATTGGAACACCAGGTCGTATCAAGGATCATATTGAGAGGGGAAATATTGACCTGAGCCACCTAAAGTTTCGTGTCCTTGATGAGGCAGATGAGATGCTAAGGATGGGTTTTGTTGATGATGTTGAACTGATTCTAGGTAAGGTACAAGATGTTACTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCTAGCTGGGTTCAACAGATTTCTAAGAAATTTCTTAAACAAGACAAGGCAACTGTTGATCTTGTTGGTAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTATCCTTCCTTGTAATAGTACTGCTAGGGCACAGGTTATCCCTGATATTATTCGTTGTTATAGCAGTGGTGGCAGGACAATTATATTTGCAGAGAAAAAGGAGTCTGCTTCTGAGCTTGCTGGATTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATTCAGCAGTCACAGCGTGAGATTACATTGAAAGGTTTTAGGTCTGGGAAATTCATGACGTTGGTGGCAACCAATGTGGCAGCCAGGGGTCTTGACATCAATGATGTTCAGTTGATTATCCAGTGTGAGCCTCCCCGGGATGTAGAAGCTTATATTCATCGATCTGGACGGACAGGAAGAGCTGGCAACACTGGAGTTGCTGTGATGCTTTATGATCCTAGAAGGTCAAATATATCTAAGATCGAAAGAGAAGCAGGTATTAAATTTGAACATGTATCTGCTCCTCAGCCTGATGAAATTGCCCAAGCTATTGGCGGGGAAGCTGCTGAATTGATTTCTGATGTGTCTGATAGTGTGATTCCTTCATTCAAAGCTGCCGCTGAGGAACTTTTGAACAACTCTGGTTTAACAGCTGTTGAGTTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTATACCGAGGTAAAAAAAAGATCACTGCTGACTTCGATGGAGAATTACGTTACACTACTTCTCGAGGGAGGAAAACCTATGTTCAACCCATCCTATGCATTTGGAACCCTAAGGAGATTCATACCTGAAGATAAGGTTGATGGAGTGCAAGGTCTTGCTCTCACGGCAGATGGAAAGGGTGCTGTTTTTGATGTACCAGTCAAGGACTTAGATGCATTTCTTGCTGGTCAGAAGAATGCTGTTAATGTAAGCTTGAAGGTTGCAACAGAATTGCCTAGTTTGCAACAAAGAGAAGAAAATAGGGGCAGATTCAATAGTCGTGGATTTGGTAATGGAAGAGGGCCTAGTAGATTTGGTAATGGTAGAGGACGAGGTGGTGGTGGGAGAGGTTTTGGAGGCAGAGGGGGAAGTAGATGGTAA 2010 0.4363 MVPSIPITDEAVAVSIDSPKSKSMKKKKEKLPTDVVSDEETAKKKSSKKRKKSSDDDEEVKNETGSEVKKEKKKKKSKVEDEDVVEEVVMKKDDPNAVSNFRISEPLKMKLKEKGIEALFPIQAMTFNTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKSVRKTGYGRVPSVLVLLPTRELANQVFADFEVYGSSLGLAACAVYGGAPYGAQEGKLRRGVDVVIGTPGRIKDHIERGNIDLSHLKFRVLDEADEMLRMGFVDDVELILGKVQDVTKVQTLLFSATLPSWVQQISKKFLKQDKATVDLVGNEKMKASTNVRHIILPCNSTARAQVIPDIIRCYSSGGRTIIFAEKKESASELAGLLPGARALHGDIQQSQREITLKGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIEREAGIKFEHVSAPQPDEIAQAIGGEAAELISDVSDSVIPSFKAAAEELLNNSGLTAVELLAKALAKAVGYTEVKKRSLLTSMENYVTLLLEGGKPMFNPSYAFGTLRRFIPEDKVDGVQGLALTADGKGAVFDVPVKDLDAFLAGQKNAVNVSLKVATELPSLQQREENRGRFNSRGFGNGRGPSRFGNGRGRGGGGRGFGGRGGSRW 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05624 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 453 IPR027417 -
Vivi2g05624 669 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 338 480 IPR001650 -
Vivi2g05624 669 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 253 261 IPR000629 -
Vivi2g05624 669 Gene3D - 548 620 - -
Vivi2g05624 669 CDD DEADc 107 304 - -
Vivi2g05624 669 Gene3D - 319 547 IPR027417 -
Vivi2g05624 669 MobiDBLite consensus disorder prediction 1 83 - -
Vivi2g05624 669 MobiDBLite consensus disorder prediction 626 669 - -
Vivi2g05624 669 CDD SF2_C_DEAD 324 450 - -
Vivi2g05624 669 CDD GUCT_RH7_like 537 622 - -
Vivi2g05624 669 Pfam Helicase conserved C-terminal domain 342 441 IPR001650 -
Vivi2g05624 669 SUPERFAMILY RNA-binding domain, RBD 535 617 IPR035979 GO:0003676
Vivi2g05624 669 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 41 510 - -
Vivi2g05624 669 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 127 309 IPR014001 -
Vivi2g05624 669 SMART ultradead3 115 327 IPR014001 -
Vivi2g05624 669 SMART helicmild6 364 441 IPR001650 -
Vivi2g05624 669 Pfam GUCT (NUC152) domain 530 625 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vivi2g05624 669 Pfam DEAD/DEAH box helicase 120 297 IPR011545 GO:0003676|GO:0005524
Vivi2g05624 669 Gene3D - 33 312 IPR027417 -
Vivi2g05624 669 MobiDBLite consensus disorder prediction 20 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05624 Vivi-Chr2 184144544 184149842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05624 79 484 Eukaryotic Initiation Factors Gene Family AT3G19760 28.878 2.47e-42 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05624 K16911 - jre:108998595 870.537