Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05616 ATGAATTGTTTTCCATTCAACATCTACTATGGAGAAAAGAAGGGTGATGATAAGGGCTTGCAGACACTATCGGGTCTGTCGAACAACTCTACTTATGGTGGGAGTGACATGAGAAGAACTGGCTCTGAATTAAATTCTCTAGATGCCTCATCAGGCAACAGCTCAGACTCCCTCAGGAGGAATGCGTTTCCGAATTTGTCCCAAAGACCTAGCAACCTTAGAGTATTTACTGTGTCTGAACTGAAATCAGCCACTAAGAATTTTGGTCGTTCTGTTATGCTTGGTGAGGGCGGATTTGGGTGTGTCTACAAGGGATTGATCAAGAGTTTAGATGACCCTCCTAGTAAAATTGAAGTTGCAGTTAAACAACTTGGTAAAAGAGGAATTCAGGGGCACAAAGAATGGGTCACTGAAGTGAATGTTCTAGGTATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGCTATTGTGCTGACGATGATGAAAGGGGAATCCAGCGGCTTTTGATATATCAATATATGCCCAATGGAAGCGTGGAACACCATTTATCCCCACGATCGGAAACTCCTCTCCCATGGAGTAGGAGACTGAAAATAGCCCAAGACGCTGCTCGCGGCTTAACATACCTGCACGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTCTGGACGAGCAGTGGAATGCAAAGCTATCAGACTTTGGATTAGCAAGATTGGGACCATCTGACGGGTTAACTCATGTCTCAACAGCGATCCTTCCCTGTCAGGTTGTAGGAACAATGGGCTATGCTGCTCCTGAATATATTCAAACAGGACGACTCACTTCAAAGATTGATGTATGGAGCTACGGTGTATTCCTTTATGAACTCATTACTGGCAGGCGTCCATTAGATCGAAATCGCCCCAAGGGTGAGCAGAAGTTGTTGGACTGGATAAGACCATACCTTTCAGATGTGAAGAAATTTCAAATAATATTGGATCCAAGACTTGAGAGGAAACACTTCTCAAAGTCAGCCCAAAAACTTGCTTTAGTAGCTAACAGATGCTTGGTCAGAAACCCAAAGAATCGCCCGAAGATGAGCGAAGTATTAGAAATGGTTAATCAGATTGTGGAGTCTTCGGCAAGTACTATTCCACAACCATCCATGAATAGCGTAGCCTCAGCCGATGATTCTCAAAACACTGAAATCAAGAACAAGAAGAGGATCATGGATCCAAAACCAGATTGTAATTGGTTTAGGTCGTGGAGACCAAAGCTTTTAAGAACATGCTGA 1296 0.429 MNCFPFNIYYGEKKGDDKGLQTLSGLSNNSTYGGSDMRRTGSELNSLDASSGNSSDSLRRNAFPNLSQRPSNLRVFTVSELKSATKNFGRSVMLGEGGFGCVYKGLIKSLDDPPSKIEVAVKQLGKRGIQGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYQYMPNGSVEHHLSPRSETPLPWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAILPCQVVGTMGYAAPEYIQTGRLTSKIDVWSYGVFLYELITGRRPLDRNRPKGEQKLLDWIRPYLSDVKKFQIILDPRLERKHFSKSAQKLALVANRCLVRNPKNRPKMSEVLEMVNQIVESSASTIPQPSMNSVASADDSQNTEIKNKKRIMDPKPDCNWFRSWRPKLLRTC 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05616 431 ProSiteProfiles Protein kinase domain profile. 88 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g05616 431 Gene3D Phosphorylase Kinase; domain 1 61 173 - -
Vivi2g05616 431 MobiDBLite consensus disorder prediction 21 65 - -
Vivi2g05616 431 FunFam Serine/threonine-protein kinase PCRK2 174 387 - -
Vivi2g05616 431 ProSitePatterns Protein kinases ATP-binding region signature. 94 122 IPR017441 GO:0005524
Vivi2g05616 431 Gene3D Transferase(Phosphotransferase) domain 1 174 402 - -
Vivi2g05616 431 Pfam Protein kinase domain 92 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g05616 431 FunFam Serine/threonine-protein kinase BIK1 55 173 - -
Vivi2g05616 431 CDD STKc_IRAK 94 377 - -
Vivi2g05616 431 PANTHER OS01G0588500 PROTEIN-RELATED 57 377 - -
Vivi2g05616 431 SUPERFAMILY Protein kinase-like (PK-like) 65 374 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05616 Vivi-Chr2 183997341 184000142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05616 1 403 Glycoside Hydrolase AT3G07070 40.394 1.92e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi2g05616 Pkinase 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05616 - - gmx:100305438 694.886