Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05615 ATGAATTGTTTTCCATTCAACATCTACTATGGAGAAAAGAAGGGTGATGATAAGGGCTTGCAGACACTATCGGGTCTGTCGAACAACTCTACTTATGGTGGGAGTGACATGAGAAGAACTGGCTCTGAATTAAATTCTCTAGATGCCTCATCAGGCAACAGCTCAGACTCCCTCAGGAGGAATGCGTTTCCGAATTTGTCCCAAAGACCTAGCAACCTTAGAGTATTTACTGTGTCTGAACTGAAATCAGCCACTAAGAATTTTGGTCGTTCTGTTATGCTTGGTGAGGGCGGATTTGGGTGTGTCTACAAGGGATTGATCAAGAGTTTAGATGACCCTCCTAGTAAAATTGAAGTTGCAGTTAAACAACTTGGTAAAAGAGGAATTCAGGGGCACAAAGAATGGGTCACTGAAGTGAATGTTCTAGGTATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGCTATTGTGCTGACGATGATGAAAGGGGAATCCAGCGGCTTTTGATATATCAATATATGCCCAATGGAAGCGTGGAACACCATTTATCCCCACGATCGGAAACTCCTCTCCCATGGAGTAGGAGACTGAAAATAGCCCAAGACGCTGCTCGCGGCTTAACATACCTGCACGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTCTGGACGAGCAGTGGAATGCAAAGCTATCAGACTTTGGATTAGCAAGATTGGGACCATCTGACGGGTTAACTCATGTCTCAACAGCGGTTGTAGGAACAATGGGCTATGCTGCTCCTGAATATATTCAAACAGGACGACTCACTTCAAAGATTGATGTATGGAGCTACGGTGTATTCCTTTATGAACTCATTACTGGCAGGCGTCCATTAGATCGAAATCGCCCCAAGGGTGAGCAGAAGTTGTTGGACTGGATAAGACCATACCTTTCAGATGTGAAGAAATTTCAAATAATATTGGATCCAAGACTTGAGAGGAAACACTTCTCAAAGTCAGCCCAAAAACTTGCTTTAGTAGCTAACAGATGCTTGGTCAGAAACCCAAAGAATCGCCCGAAGATGAGCGAAGTATTAGAAATGGTTAATCAGATTGTGGAGTCTTCGGCAAGTACTATTCCACAACCATCCATGAATAGCGTAGCCTCAGCCGATGATTCTCAAAACACTGAAATCAAGAACAAGAAGAGGATCATGGATCCAAAACCAGATTGTAATTGGTTTAGGTCGTGGAGACCAAAGCTTTTAAGAACATGCTGA 1281 0.4278 MNCFPFNIYYGEKKGDDKGLQTLSGLSNNSTYGGSDMRRTGSELNSLDASSGNSSDSLRRNAFPNLSQRPSNLRVFTVSELKSATKNFGRSVMLGEGGFGCVYKGLIKSLDDPPSKIEVAVKQLGKRGIQGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYQYMPNGSVEHHLSPRSETPLPWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYIQTGRLTSKIDVWSYGVFLYELITGRRPLDRNRPKGEQKLLDWIRPYLSDVKKFQIILDPRLERKHFSKSAQKLALVANRCLVRNPKNRPKMSEVLEMVNQIVESSASTIPQPSMNSVASADDSQNTEIKNKKRIMDPKPDCNWFRSWRPKLLRTC 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05615 426 Gene3D Phosphorylase Kinase; domain 1 61 173 - -
Vivi2g05615 426 SUPERFAMILY Protein kinase-like (PK-like) 65 369 IPR011009 -
Vivi2g05615 426 MobiDBLite consensus disorder prediction 21 65 - -
Vivi2g05615 426 ProSitePatterns Protein kinases ATP-binding region signature. 94 122 IPR017441 GO:0005524
Vivi2g05615 426 Pfam Protein kinase domain 92 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g05615 426 Gene3D Transferase(Phosphotransferase) domain 1 174 397 - -
Vivi2g05615 426 PANTHER OS01G0588500 PROTEIN-RELATED 57 372 - -
Vivi2g05615 426 CDD STKc_IRAK 94 372 - -
Vivi2g05615 426 ProSiteProfiles Protein kinase domain profile. 88 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g05615 426 FunFam Serine/threonine-protein kinase PCRK2 174 382 - -
Vivi2g05615 426 FunFam Serine/threonine-protein kinase BIK1 55 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05615 Vivi-Chr2 183997341 184001636 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05615 1 398 Glycoside Hydrolase AT3G07070 40.898 1.32e-92 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi2g05615 Pkinase 6.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05615 - - gmx:100305438 701.049