Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05611 ATGGCACGACCGTTGGAAAAGATCTCTGATATTAACGATGAAAAGGAACTTTGGAAAGTTGCTGTTAAGATACATCACAAATGGAGTGTCATCTCTAACAACAAGGAACATTTTGAGATGGTTGTCTATGATTCTGAGGGAAGTGATATCCATGTTATCGTACCTCCCGTATATAGGCAGAATTTTGATTCACTGTTTGTTGTTAATGATACTTACACTATTGCAAACTTCCAAGTTCAGCTGAATGATCTGCTGTTCAAACCTTCTGCTCACAAGTACGTCCTTAAATTTACTGGTGGGACAAAAGTTGGGGATAGAAATGTCCATCAGATTCAGGAAAAAGCTAGCAGACTCACACCTTTTCTTGATATTTTAACCGGAAAATGGATTAAAGATCAACTTTTAGATGTTATCGGAGTGGTTGATGAAATAGGGTACACGCAGGTCCAGGTGGGTAGCAAAAAGCAACAGGTCAACTTCGTGATCCGCGACTTGAGCAACAACACTATAACAGTTACGTTATGGGAGGCGTACGCGGTGCAGTTTATGAACTACGTTGAACAGCAGGTCGATACTGCTGTTCCTGTTGTGATTATGATTCAATATGCCAAAGTTAAAGAAGCTTTTGGCAAATATCCTCTGTCTGTTACCAATACTTACAATGTCACCAAACTGGCTATTAATGAAGACATGGAAACAATCAAACAATTTGCTAAAATGCTTACACAGGATACAATAGTGGCTGTGTCGGGACTTCGCAGCCAGCAGCCTCAGGGAAGGTCGCAAAACTCCTACAGTTCTCGCCAATCACCTACCCAAAAATTGTTGTCTAATGCTGTTGTTCTTCCTCTTGAACAAATCGTTAAACTCAAAGACACTACTTTTTGTGCTACGGTTGCCACAATTACAAAAATCTTTGCCTCTAAGTATGGATGGTACTACCAGGCATGCCATGAATGCCCGAACAAAGTCACTGGTGATAATCCTCCCTACAAGTGTGTCAAGGGACATGACACAGAAACTGCCATTTTCAGGTATAAAATTGAGGTTGGTGTTCTTCATGCTGGTACAAAATGCAAGTTTGTTTTGTGGGACAAAGAGAGTGAGGACCTATTGGAAGTATCGGCTGCTCATATGCGCGAAACCATGTTTCAGGCTGGAATATTCGATCCCCTCGATTTTCCACTGGCACTTGACAAGCTCCTGAATCAGGAGCTTGCCTTCAAAGTCAAGTGGCAACCAGATTGGTCTAATTGCTCGGTCATCATGTTAGTTAAAGATAAAACTATTGTGGATCAACTCAAAGCTGAATGGGTGGATGCAACTACAGTTAATACACAACAGCTTTCCACCCCTGTCAACCATATCAAAGAGAGTGTTGATGAGGCCGTTCCTATCGATGATTCCGACATTGTTACGGATCCTGAAATAACTTCAAAATTGCACGGTGAACCAGTCACACCTACGGCTAGAAGACAGAGCCCCGATCCATCCATTGAATCTACAGGTCATGCAACACACAGCGAAGGAGATTTGTCTTCGACTAAACTTAAGAAACAGACCAGAATCACTAGGAAATTAGTGAAGATTGAAAAATAG 1599 0.4159 MARPLEKISDINDEKELWKVAVKIHHKWSVISNNKEHFEMVVYDSEGSDIHVIVPPVYRQNFDSLFVVNDTYTIANFQVQLNDLLFKPSAHKYVLKFTGGTKVGDRNVHQIQEKASRLTPFLDILTGKWIKDQLLDVIGVVDEIGYTQVQVGSKKQQVNFVIRDLSNNTITVTLWEAYAVQFMNYVEQQVDTAVPVVIMIQYAKVKEAFGKYPLSVTNTYNVTKLAINEDMETIKQFAKMLTQDTIVAVSGLRSQQPQGRSQNSYSSRQSPTQKLLSNAVVLPLEQIVKLKDTTFCATVATITKIFASKYGWYYQACHECPNKVTGDNPPYKCVKGHDTETAIFRYKIEVGVLHAGTKCKFVLWDKESEDLLEVSAAHMRETMFQAGIFDPLDFPLALDKLLNQELAFKVKWQPDWSNCSVIMLVKDKTIVDQLKAEWVDATTVNTQQLSTPVNHIKESVDEAVPIDDSDIVTDPEITSKLHGEPVTPTARRQSPDPSIESTGHATHSEGDLSSTKLKKQTRITRKLVKIEK 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05611 532 MobiDBLite consensus disorder prediction 491 510 - -
Vivi2g05611 532 PANTHER OS03G0429900 PROTEIN 8 516 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi2g05611 532 Gene3D - 258 435 IPR012340 -
Vivi2g05611 532 Pfam Replication protein A OB domain 131 220 IPR031657 -
Vivi2g05611 532 Pfam Domain of unknown function DUF223 39 128 IPR003871 -
Vivi2g05611 532 CDD RPA1_DBD_B_like 136 237 - -
Vivi2g05611 532 Gene3D - 3 104 IPR012340 -
Vivi2g05611 532 SUPERFAMILY Nucleic acid-binding proteins 119 244 IPR012340 -
Vivi2g05611 532 SUPERFAMILY Nucleic acid-binding proteins 5 103 IPR012340 -
Vivi2g05611 532 SUPERFAMILY Nucleic acid-binding proteins 291 418 IPR012340 -
Vivi2g05611 532 MobiDBLite consensus disorder prediction 252 271 - -
Vivi2g05611 532 CDD RPA1_DBD_A_like 19 103 - -
Vivi2g05611 532 Gene3D - 110 245 IPR012340 -
Vivi2g05611 532 MobiDBLite consensus disorder prediction 475 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05611 Vivi-Chr2 183950256 183952901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05611 1 387 Core DNA Replication Machinery Family AT5G08020 22.333 5.52e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05611 - - vvo:131641718 850.892