Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05608 ATGACTTCCCAAGTAGCTCTCCACACATTCTCTCAACCAGACACCAAAACCTCCACCGCCGTAACCGCCACAGATTCCGATCCCAATCACCATCTCTCCACCGTTCGCAGAACTTCCACCACCGCCTCACGATCCACCAAAGACCGTCACACTAAGGTTAACGGCCGTGGCCGCCGTGTCCGTATGCCGCCTCTTTGCGCCGCTAGGATATTCCAGCTTACACGCGAACTCGGCCACCGCTCCGACGGTGAAACCATCGAGTGGCTCCTCCGACACGCTGAGCCGTCTATTATCGCTGCCACTGGGACTGGCACTGTTCCCGCTGATCCTGTCTCGACTGTCTCACCGGTTTCGCCCTCGACTGTGCAGTCTGTGTCGTGCAATGTTCATCCGGTGTCTTCGGTTGGTCACGGTAGTCAAGGCGTGTTTGCTGCGGTACAGCCGCCGAGCTGCCGGCTTGACCTCTGTCAGCCTACTGGAATGGACTACGCGGCGGCGGAGAATAGATACCGGCATATGCCGTTCACGGCGTTGTTGTTGCAACTGACTACGGAGGAGAATCAGCAAGAGGAAGCGCTGAGTGAACAATGA 591 0.5753 MTSQVALHTFSQPDTKTSTAVTATDSDPNHHLSTVRRTSTTASRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPADPVSTVSPVSPSTVQSVSCNVHPVSSVGHGSQGVFAAVQPPSCRLDLCQPTGMDYAAAENRYRHMPFTALLLQLTTEENQQEEALSEQ 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05608 196 Pfam TCP family transcription factor 45 143 IPR017887 -
Vivi2g05608 196 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 131 IPR005333 GO:0003700
Vivi2g05608 196 ProSiteProfiles TCP domain profile. 46 100 IPR017887 -
Vivi2g05608 196 MobiDBLite consensus disorder prediction 1 41 - -
Vivi2g05608 196 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05608 Vivi-Chr2 183896000 183897077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05608 46 181 TCP Transcription Factor Family AT2G37000 58.088 1.82e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi2g05608 TCP 8.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05608 - - cam:101510590 263.077