Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05596 ATGTTTCCACTTACTCCATTAAAATTTCAACTCCCAACCCAACTCCCACTTTCTTCTTCTCTCCCTTTCTCTAAATTCAACAAAACCCAAAAACCTTTCTATTTTCTCATCTCCACCATGCTTTCCCGTAAACTCTTTCAATCTCAGCCGTACACGTCATCACCACATCTTCTACCTCGCCGCCACCACCACATTTTAATTCCTCTCCTCGCCGCAACCGCCGTCTTACTAACCATCCTCCTCTTTTTTATCTTCCTCTTCCGCCGCACCCGTAAAAAACGCACCGCTCCATTCTCAATCACCGACGATAATCCACCGCACCGGTTCTCCTACTCCCTCCTCCGCCGTGCTACAAACTCCTTCTCAGTTCCACTCGGTCATGGCGGATTTGGTACCGTCTTCTCCGGCACTCTCTCTTCGAAACCGATCGCTGTTAAGCTCATGGATAGTTCATCTCAGCAAGGTGAACGAGAGTTTCACAACGAACTCTTCTTCTCTTCGAAGCTTCGGTCTCTTTATATAGTTCCTCCGTTAGGGTTTTCGTCTGATCCTAAACGGTGCCGTTTTCTTCTAGTTTATCCTTTGATGCAAAACGGTAATCTTCAAGACGCGCTTTTGAAGCGTAAGTGTTCTGAGCTTTTTAATTGGAGTAAAAGGTTTGAAATTGTGATGGATATAGCTAAGGGACTTTGTTATCTTCACTCTTTTGATCCTCCGGTTATACACGGTGATATAAAGCCTAGTAATATTCTTTTAGATTGTGAATTTGCTGCCAAAATTGGTGATTTTGGACTTGCGCGGGTGAAATCGGAGGCGGTTAGGGTTGATGTTGAGCTTTTGGATATTGATAGTGAGGATGAAATGAAGAAAAGGGATGGGGATTTGGAGTGTGGTGGTGTTAGGGTTGTGATTGATGATTGTGGATCTGTGGAAAGTGTTCATACTACTTTTTTTGAAGATGGTGCTAATTTGGGTTTGGAGCAATCTCCGATGGCGTCGCCTATGACGATAGCTTTGGCAGCGTCGCCGGGGTTTGATAAGGCTAGTGTGAAGAGTGAGAAGGATGTGGTTAGTGTTGAGGATGGTAAGAGGAATGGGAAAGGGGTTGCGGGTAATTCGGTTAGGGATTGGTGGTGGAAACATGATAATGAGGTTGCAGGTTTGACGCCGGTTGGGGAAGGTAAGAAGGTGAAGGATTATGTGATGGATTGGATTGGAAGGGAAGTGAAAAGTGAAAAGAGTGAATTAGTGGAAGAGAAGATTGAGAAGAAGAAGAAGGAGAAGAAGAAGAACAAGAAGCATAAATTGGAATGGTGGGAATCAATGGATGAGGAAAACGTTGGTGGGGTGATGAAGAAGGATAAGAGAAAGTCGGTTAGGGAATGGTGGAAGGAGGAATATTGTGAAGAGGCTGCAAAGGAGAAAAAGAAGAAGAATAAGATTAAGAATAAGAAGAAAAAAGGCGTAGAAAATGATGATGGCGTTAGCGTTGATGATAATTGGTGGATGAGTGATGATACATTATACGGGGATAGAAAGAAGGAAAAGAGAAGAAGTAGAAATAATCGCGGTAGTGTTGATTGGTGGTTAGACGGGTTTAGTGGCGAGTTATGGAGAGCACGTAGGAATAGTTTTGATTCAGCTAGTGGAGACATTCCAAAGAGTGGTGGTGTGAGTAGTACACCAAGTATGAGAGGAACTATTTGTTATGTTGCTCCCGAGTTTGGCTATGGTGAAGATGTATCCGAAAAATGTGATGTTTATAGCTTTGGGATCTTGTTGCTTGTTATCATTTCCGGGAGGCGCCCACTTCAAGTGACAGGTTCACCAATGTCAGAGTTTCAAAGAGCAAATCTTTTGTCATGGGCACGCCATTGTGCAAGAAACGGTAAGCTTATTGAGTTGGTTGATGAATCTATTCAGTCATTGAATAAGGACCAGGCTCTGATCTGCATCAAAGTGGCTTTGCTTTGTTTGCTAAAGTCACCTACTCGGCGTCCTTCAATGAAGGAGGTTGTCGGGATGCTAAGCGGAGAGCTGGAACCACCCCAGTTGCCTGTTGAGTATTCGCCTTCAACCCCTTCTCGCTTCCCTTTCAAATGTAGGAAGAAAAACCAAGGCCGGTAA 2127 0.4405 MFPLTPLKFQLPTQLPLSSSLPFSKFNKTQKPFYFLISTMLSRKLFQSQPYTSSPHLLPRRHHHILIPLLAATAVLLTILLFFIFLFRRTRKKRTAPFSITDDNPPHRFSYSLLRRATNSFSVPLGHGGFGTVFSGTLSSKPIAVKLMDSSSQQGEREFHNELFFSSKLRSLYIVPPLGFSSDPKRCRFLLVYPLMQNGNLQDALLKRKCSELFNWSKRFEIVMDIAKGLCYLHSFDPPVIHGDIKPSNILLDCEFAAKIGDFGLARVKSEAVRVDVELLDIDSEDEMKKRDGDLECGGVRVVIDDCGSVESVHTTFFEDGANLGLEQSPMASPMTIALAASPGFDKASVKSEKDVVSVEDGKRNGKGVAGNSVRDWWWKHDNEVAGLTPVGEGKKVKDYVMDWIGREVKSEKSELVEEKIEKKKKEKKKNKKHKLEWWESMDEENVGGVMKKDKRKSVREWWKEEYCEEAAKEKKKKNKIKNKKKKGVENDDGVSVDDNWWMSDDTLYGDRKKEKRRSRNNRGSVDWWLDGFSGELWRARRNSFDSASGDIPKSGGVSSTPSMRGTICYVAPEFGYGEDVSEKCDVYSFGILLLVIISGRRPLQVTGSPMSEFQRANLLSWARHCARNGKLIELVDESIQSLNKDQALICIKVALLCLLKSPTRRPSMKEVVGMLSGELEPPQLPVEYSPSTPSRFPFKCRKKNQGR 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05596 708 Coils Coil 407 437 - -
Vivi2g05596 708 Gene3D Phosphorylase Kinase; domain 1 101 194 - -
Vivi2g05596 708 PANTHER OS07G0586332 PROTEIN 41 705 IPR044576 -
Vivi2g05596 708 SMART serkin_6 119 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g05596 708 MobiDBLite consensus disorder prediction 684 708 - -
Vivi2g05596 708 Coils Coil 464 484 - -
Vivi2g05596 708 SUPERFAMILY Protein kinase-like (PK-like) 100 694 IPR011009 -
Vivi2g05596 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Vivi2g05596 708 ProSitePatterns Protein kinases ATP-binding region signature. 125 146 IPR017441 GO:0005524
Vivi2g05596 708 ProSiteProfiles Protein kinase domain profile. 119 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g05596 708 Gene3D Transferase(Phosphotransferase) domain 1 196 291 - -
Vivi2g05596 708 Gene3D Transferase(Phosphotransferase) domain 1 543 683 - -
Vivi2g05596 708 Pfam Protein tyrosine and serine/threonine kinase 561 675 IPR001245 GO:0004672|GO:0006468
Vivi2g05596 708 Pfam Protein tyrosine and serine/threonine kinase 124 270 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05596 Vivi-Chr2 183578435 183581010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05596 561 683 Receptor kinase-like Gene Family AT2G43700 30.645 1.53e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vivi2g05596 PK_Tyr_Ser-Thr 1.3e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05596 - - lja:Lj2g3v0473820.1 790.415