Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05595 ATGGAAGAAAACAAGAAGTGGATGCATAAAGAGACAGAAAGACAAAGAAGACAAGAGATGGCCAACCTCTGCACCAACCTTAGATCTCTTCTTCCTTTAGAGTATATTAAGGGAAAACGCTCGATTTCGGATCATGTGAATGAGGCTATGAATTATATCAACCACTTACAAACCAAGGTGAAGCAGTTAGAAGCTAAGAAGGAAGAGTTAAAGATGATATCTAGTTTGAATACAAATGTCCCTCAAAATGACTCTAGTTGTAGTGCTACCAATCTTCAACCCTTTGTTATTGTTCAACCTTTCCCCGGAGGAATTGAGATTGTGTGCAGTTACAGCTTCAAGAAGTGTTTGTTTCCTTTGTCAAAAGTGCTTCTCATGGTGATTAAAGAAGGGCTTAATGTTATAAGCTGCACTTCCAACAAAATAGATGGCAGATTCATATACACCATACGATCTGAGGATTCGATAATGACTGGCATTGATTGCTCTGAACTGCAACGAAAACTTACCGAAGCAATATCATCTTCAAGTTTACCAGAGAGTTCATCTGAACCAGAAAATTGGCAATATCTTGAGAAAACTGTATATTTTGAAAATTTCTGA 603 0.3748 MEENKKWMHKETERQRRQEMANLCTNLRSLLPLEYIKGKRSISDHVNEAMNYINHLQTKVKQLEAKKEELKMISSLNTNVPQNDSSCSATNLQPFVIVQPFPGGIEIVCSYSFKKCLFPLSKVLLMVIKEGLNVISCTSNKIDGRFIYTIRSEDSIMTGIDCSELQRKLTEAISSSSLPESSSEPENWQYLEKTVYFENF 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05595 200 CDD bHLH_AtORG2_like 5 79 - -
Vivi2g05595 200 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Vivi2g05595 200 Coils Coil 46 73 - -
Vivi2g05595 200 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 74 IPR036638 GO:0046983
Vivi2g05595 200 SMART finulus 10 62 IPR011598 GO:0046983
Vivi2g05595 200 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 5 172 - -
Vivi2g05595 200 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Vivi2g05595 200 Gene3D - 1 87 IPR036638 GO:0046983
Vivi2g05595 200 FunFam Transcription factor bHLH126 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05595 Vivi-Chr2 183567386 183570096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05595 5 169 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 41.279 3.31e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g05595 HLH 7.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05595 - - ccaj:109791323 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05595 2 183567386 183570096 Vivi2g05595 2 183567386 183570096 ECH