Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05580 ATGGGAAGAGGGAGAGTAGTTTTGGAGAGAATAGAGAACAAGATCAACAGGCAAGTAACATTCTCAAAGAGAAGAAGTGGATTATTGAAGAAAGCTTTTGAGCTTTGTGTGCTATGTGATGCTGAAGTAGCACTTATCATCTTTTCAAGTCGTGGCAAGCTTTTCCAATACAGTAGCACTGATGTTAACAAAATCATTGAAAGGTATCGACAATGTCGTTACAACAAGTTACAAGCTGGAAATTCATTTGGCCAAAATGATTCACAGAACTTGTACCAGGATTACTTGAAATTAAAGGCAAAATATGAATCTCTTGACCGAAAACAAAGGCATTTTAATGGTGAAGAACTTGAGGAACTAAACTTGAAAGAATTGCAGAGCCTTGAGGAACGACTAGACTTAACTCTCACACAAGCTAGACAGCAACAAATGACAAAGCTCTTGGCACGAGCTGAGGAATTACGTGAAAAGGTGCATAACTTGGAGGAGCTTAACAAAACATTGGAGCCCAAGACAATTGATGAACTCTCAAACCTAGTTGGGCACAATACAAATCATATTCAATTGCGTGCTACAAGCCAATCATTTTGA 591 0.3841 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSSTDVNKIIERYRQCRYNKLQAGNSFGQNDSQNLYQDYLKLKAKYESLDRKQRHFNGEELEELNLKELQSLEERLDLTLTQARQQQMTKLLARAEELREKVHNLEELNKTLEPKTIDELSNLVGHNTNHIQLRATSQSF 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05580 196 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi2g05580 196 Coils Coil 122 171 - -
Vivi2g05580 196 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi2g05580 196 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi2g05580 196 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi2g05580 196 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi2g05580 196 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Vivi2g05580 196 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi2g05580 196 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vivi2g05580 196 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi2g05580 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi2g05580 196 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vivi2g05580 196 Gene3D - 13 105 IPR036879 GO:0003677|GO:0046983
Vivi2g05580 196 FunFam MADS-box transcription factor MADS-MC 13 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05580 Vivi-Chr2 183119590 183123718 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05580 1 171 MADS-box Gene Family AT2G45650 54.386 1.50e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi2g05580 K-box 2.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05580 K09264 - gmx:100793681 264.618