Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05579 ATGGGAAGAGGGAGAGTAGTTTTGGAGAGAATAGAGAACAAGATCAACAGGCAAGTAACATTCTCAAAGAGAAGAAGTGGATTATTGAAGAAAGCTTTTGAGCTTTGTGTGCTATGTGATGCTGAAGTAGCACTTATCATCTTTTCAAGTCGTGGCAAGCTTTTCCAATACAGTAGCACTGATGTTAACAAAATCATTGAAAGGTATCGACAATGTCGTTACAACAAGTTACAAGCTGGAAATTCATTTGGCCAAAATGATTCACAGAACTTGTACCAGGATTACTTGAAATTAAAGGCAAAATATGAATCTCTTGACCGAAAACAAAGGCATTTTAATGGTGAAGAACTTGAGGAACTAAACTTGAAAGAATTGCAGAGCCTTGAGGAACGACTAGACTTAACTCTCACACAAGCTAGACAGCAACAAATGACAAAGCTCTTGGCACGAGCTGAGGAATTACGTGAAAAGGTGCATAACTTGGAGGAGCTTAACAAAACATTGGAGCCCAAGTTGGTTTCTACACCATGA 531 0.3879 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSSTDVNKIIERYRQCRYNKLQAGNSFGQNDSQNLYQDYLKLKAKYESLDRKQRHFNGEELEELNLKELQSLEERLDLTLTQARQQQMTKLLARAEELREKVHNLEELNKTLEPKLVSTP 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05579 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi2g05579 176 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Vivi2g05579 176 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi2g05579 176 Coils Coil 122 171 - -
Vivi2g05579 176 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi2g05579 176 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vivi2g05579 176 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi2g05579 176 ProSiteProfiles K-box domain profile. 88 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi2g05579 176 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Vivi2g05579 176 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 152 - -
Vivi2g05579 176 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vivi2g05579 176 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi2g05579 176 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi2g05579 176 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05579 Vivi-Chr2 183119589 183123720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05579 1 172 MADS-box Gene Family AT2G45650 54.070 1.08e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi2g05579 K-box 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05579 K09264 - gmx:100793681 246.128