LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g05570	ATGCACGTCACTAGTGTATTTTTTGTTTGTCTCTTATTCATGTTGGCATCGAAGGGCGAAACAACAAACACAAATTCTTCAGATCAATTAGTATTCCAACATTTTCATGCAGCTCAAATTCACAAACACAATGTCTTTCTTAGTTTTCGTGGTCTAGATATTCGTGATGGTTTTCTTGCCCATTTGATTGAAGCTTTGTCTCAAAAGAACATAACTTTCTTCGTAGACGATAAGATTATAAAAGGAGATGAAATAGCAGAGTCACTTGTTGAAGCAATTGAAACATCATCGATTTCTTTGGTGATATTCTCTGAAAACTATGCTTCTTCATCGTGGTGTTTGGATGAGATAGTCAAAATTGTTGAATGTAGAGAGGAAAAGGGACAGGTTTTATTGCCTGTTTTCTATAAAGTGGACCCCACAATTGTGAGGCATCAAAATGGAACCTATGTAATTGAATTTGCTGAACACGAGAAAAAATACAGTTCGAGCAGGGTGCAACGGTGGAGATCTGCTTTGAAGAAATCATCGGCTATCAGTGGGTTTCATTCATCAAATTATGTAAATGAGGCAGAGCTTATTAAAGAAATAGTTAAAAATGTGTTGAAGAGGTTGGATCATGTACGTCAATTTAGTTCAAAACAACTTGTTGGAGTTGGAAAACAAATTTCACGAGTGGAATCATTGTTAGAAGAAGATTCACAAAATGTTCGTGTTATTGGAATATGGGGGGTGCATGGTATAGGTAAAACAACTATTGCACATGTGATATATGACAGGCTCTATTCTGAGTATGATGGTTCTTACTTCAAGGCTGAGGTAAGAAAAGAATGGGGAACACATGGAGATGTGTACTTAAAGAAAGATCTTCTTTCTAATGTATTAGGGAAAAAGGATTTGAAAATTGATACACAATATGGATTGCCCTATTTTGTTGAGAGGAGGCTTCGTCGTATGAAGGTTCTTATTGTTCTTGATGATGTCAATGATCCACATCAACTAGAAACTTTAATTGGAAACCTTGATTTGTATGGTAAAGGTAGTAAAATCATCATAACAACCGATGACAAGCAAGTACTTACCAAGATGGTTGCTGCTAAGGATATATATTATGTTAAGCCATTAGACACTAATGACTCTCTAAGTCTTTTCAGTTTGCATGCCTTTGAACAAAATCAAACATATGAAATGGAGTACTATGAGTTGTCTAAGATGATTGTCAAGTATGCCAATGGAATTCCACTTGTTCTTAAAATTTTGGGTCAACATCTTCATGGACAAGATAAAAGTATATGGAAGAAAAAACTAAAGACGCTTAAAAAAGCTCCAATTAAATACGTTCATGATATTATCAAATTGAATTACAATGATCTAGATCGTCATGAGCAGATGATATTTTTAGACATTGCATGTTTTTTTGATGGACTGCATCTCAAAGTTGATGACCTAAATCTGTTGTTAAATGATGGTGGTTATTCAATAGGTTTTGAGCTAGAAAAACTGAAAAATAAAGACCTTATAACTATTTCTCCAGATGATGTTGTATCTATGCACAATATTATACAAGAATCAGCTTGGCAAATTGTTCGCGAAGAATCCAATTATGATGTTGGACATCAAAGTCACCTACTTGATCCTTCTGACATTTATGAAGTACTTGAAAATAACAAGGGGACTAACGCGATTAGAAGCATATCTACCGAATTATCAATAATTGATGATCTGAAGATAAATCCCAAAGTGTTTTCCAAGATGAACAGACTACAATATCTGGATATTAAAAGTAAAGGATACAATTTTTACGTGTTTCTTCAATTTCCATTGAACTTGTATCTTCCTCAAGGGCTTGAATCTTTGCCAAACGACCTCAAATATCTTCGTTGGTCATATTACCCTCTGGAGTCTTTACCTTTTAAGTTTACTGCGGAGAAACTTGTTGTGTTGAACTTGCAGTATAGCCAAGTGAGAAAACTTTGGCATGAAGAGAAGGATGTTATGAATTTAAAGGATCTAATATTGAGTTCATCTTTAAACCTTGTGGAGCTTCCAGACTTGTCAAAGGCTAAAAATCTTGCAACTATCGATCTTCGAGCGTGTGTACGGTTGACTAGTATACATCCATCAGTGTTTTCTCTCAACAAGCTTGAGAAATTGGATCTAAGTGAATGTTTTTCCCTCACAAACCTCAAAAGCAACATCCATTCAAGTTCCATCCGTTATCTGTCCCTTGCTGGTTGTACTGCACTAGAGGAGTTCTCAGTAACCTCAAAGGAAATGGTAATTTTAAATTTAGAATTCACAGGTATTAGAAAGCTACCATCATCAATTGGACTACAAAAGAAACTTGAAAAGTTGATTCTTTCACACACTTACATTGAGAACTTGCCTAAGAGTATCAAGCATCTTTCAATGCTGAGACATCTAGAATTACAAAATTGTTCGAACCTTCAAAGTCTACCAAGGCTTCCGTCATCATTGATAACTCTAGATGTCAGTGGTTGTGTAACATTGGAGGATGTAACTTTCCCTTCAATTTCTCTTCAAATGTCAAAGGAAAACAAGACAAGGGTTGCCTTTTGGAATTGCCTGAAACTGGATCAACATTCTCTTAAAGAAATAGAATTGAATGCACAGATTAACATGATAAAACTTGCACACAAGCAAATATCTACATCTGGTGATGAACACGATTATGATGCTCAAGGCACATACGTGTATCCTGGAAGCAGTGTTCCAAAATGGATGATATATAGGACAAAAAGTGATTCCATGATTGTTGATCTCTCTTTTGTGAATCATTCCTCAGATCAATTGGCCTTTATTTTTTGCTTCATTATTCCACAAATCAAATCACGGGGTTCCATTTTGAGATTTAATATTAGTGTTGACAGCGAAGATGAAAATATTCAACTATACTTTGATAGACCTAGTCTTGGAATTAAATCAGATCATGTGTATCTAACGTATGACCAAGGTTTGTCTCGGTATCTAAATAGTCGGCTGAAAAATCATTCAAATTTCAAAATTAAGGTTACAATGGAATCAGGAACACCGATATCAGGGTATATGGTAGAAATGTTGTTGAGAGGAGTAGGGGTCAGCCCATTAAATAGCTCACAATATCTCAATTTCATCCAACACATGGAAATTATTACTGAAGGTCCAATTTATTTACAGAGTAGGGTGGTTCATATACTTTTCACAATTTGCATAGGATTAGTTATAGGTTTTTTATGCTACTAA	3243	0.3509	MHVTSVFFVCLLFMLASKGETTNTNSSDQLVFQHFHAAQIHKHNVFLSFRGLDIRDGFLAHLIEALSQKNITFFVDDKIIKGDEIAESLVEAIETSSISLVIFSENYASSSWCLDEIVKIVECREEKGQVLLPVFYKVDPTIVRHQNGTYVIEFAEHEKKYSSSRVQRWRSALKKSSAISGFHSSNYVNEAELIKEIVKNVLKRLDHVRQFSSKQLVGVGKQISRVESLLEEDSQNVRVIGIWGVHGIGKTTIAHVIYDRLYSEYDGSYFKAEVRKEWGTHGDVYLKKDLLSNVLGKKDLKIDTQYGLPYFVERRLRRMKVLIVLDDVNDPHQLETLIGNLDLYGKGSKIIITTDDKQVLTKMVAAKDIYYVKPLDTNDSLSLFSLHAFEQNQTYEMEYYELSKMIVKYANGIPLVLKILGQHLHGQDKSIWKKKLKTLKKAPIKYVHDIIKLNYNDLDRHEQMIFLDIACFFDGLHLKVDDLNLLLNDGGYSIGFELEKLKNKDLITISPDDVVSMHNIIQESAWQIVREESNYDVGHQSHLLDPSDIYEVLENNKGTNAIRSISTELSIIDDLKINPKVFSKMNRLQYLDIKSKGYNFYVFLQFPLNLYLPQGLESLPNDLKYLRWSYYPLESLPFKFTAEKLVVLNLQYSQVRKLWHEEKDVMNLKDLILSSSLNLVELPDLSKAKNLATIDLRACVRLTSIHPSVFSLNKLEKLDLSECFSLTNLKSNIHSSSIRYLSLAGCTALEEFSVTSKEMVILNLEFTGIRKLPSSIGLQKKLEKLILSHTYIENLPKSIKHLSMLRHLELQNCSNLQSLPRLPSSLITLDVSGCVTLEDVTFPSISLQMSKENKTRVAFWNCLKLDQHSLKEIELNAQINMIKLAHKQISTSGDEHDYDAQGTYVYPGSSVPKWMIYRTKSDSMIVDLSFVNHSSDQLAFIFCFIIPQIKSRGSILRFNISVDSEDENIQLYFDRPSLGIKSDHVYLTYDQGLSRYLNSRLKNHSNFKIKVTMESGTPISGYMVEMLLRGVGVSPLNSSQYLNFIQHMEIITEGPIYLQSRVVHILFTICIGLVIGFLCY	1080

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g05570	1080	Gene3D	-	40	202	IPR035897	-
	Vivi2g05570	1080	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	204	469	IPR027417	-
	Vivi2g05570	1080	SUPERFAMILY	"Winged helix" DNA-binding domain	447	553	IPR036390	-
	Vivi2g05570	1080	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	43	836	IPR044974	GO:0006952
	Vivi2g05570	1080	Pfam	NB-ARC domain	227	460	IPR002182	GO:0043531
	Vivi2g05570	1080	Pfam	TIR domain	42	211	IPR000157	GO:0007165
	Vivi2g05570	1080	Gene3D	Ribonuclease Inhibitor	735	880	IPR032675	-
	Vivi2g05570	1080	PRINTS	Disease resistance protein signature	410	424	-	-
	Vivi2g05570	1080	PRINTS	Disease resistance protein signature	710	726	-	-
	Vivi2g05570	1080	PRINTS	Disease resistance protein signature	239	254	-	-
	Vivi2g05570	1080	PRINTS	Disease resistance protein signature	315	329	-	-
	Vivi2g05570	1080	ProSiteProfiles	TIR domain profile.	41	205	IPR000157	GO:0007165
	Vivi2g05570	1080	SUPERFAMILY	L domain-like	574	862	-	-
	Vivi2g05570	1080	Gene3D	-	203	372	IPR027417	-
	Vivi2g05570	1080	Gene3D	Ribonuclease Inhibitor	550	724	IPR032675	-
	Vivi2g05570	1080	Gene3D	-	375	459	IPR042197	-
	Vivi2g05570	1080	SUPERFAMILY	Toll/Interleukin receptor TIR domain	42	182	IPR035897	-
	Vivi2g05570	1080	SMART	till_3	42	179	IPR000157	GO:0007165
	Vivi2g05570	1080	FunFam	Disease resistance protein (TIR-NBS-LRR class)	39	207	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g05570	Vivi-Chr2	182882952	182888507	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g05570	43	825	WRKY Transcription Factor Family	AT4G12020	33.039	1.43e-98	342

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g05570	-		-	mtr:11419915	1436.78