Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05560 ATGGGTAAAGGGGGAATGTCAATTGATGATCATGTTGAACAACACAATATGGCTGCTTGGCTTGTTGGTTTAAACACTCTCAAGATTCAACCTTTCATCCTTCCAGCTCTTGGACCTCATGATGTCAGAATTAGAATGAAAGCTGTTGGAATCTGTGGGAGTGATGTTCACTACCTCAAGACAATGAGATGTGCAGATTTTATTGTTAAAGAACCAATGGTTATTGGTCATGAGTGTGCTGGGATCATAGAAGAAATTGGCAGTGAGGTCAAGAATTTGGTGTCCGGTGACCGTGTCGCGATCGAGCCTGGGATCAGTTGTTGGCGTTGTGACCATTGCAAACTTGGTCGATATAATCTATGCCCTGATATGAAGTTTTTTGCTACTCCACCTGTTCATGGTTCCCTTGCTAATCAGATAGTTCATCCAGCAGACCTATGTTTTAAACTACCAGACAATGTGAGCTTGGAGGAAGGGGCAATGTGTGAACCCTTAAGTGTCGGCGTTCATGCTTGTAGGCGAGCTAATATCGGACCGGAAACAAATGTGTTGGTTATGGGAGCAGGACCTATTGGACTTGTTACAATGCTTTCGGCTCGTGCTTTCGGGGCACCTAGGATTGTTGTCGTGGATGTGGATGACCATCGTCTATCTGTTGCAAAGAGTCTTGGCGCAGACGATATTGTTAAAGTTTCAACAAACATTCAGGATGTAGTTGAAGAAGTTAAGCAAATACATAACGTTATGGGTGCTGGAATAGATGTTACCTTTGACTGTGCTGGTTTTAACAAAACCATGACTACAGCATTGACTGCTACTCAACCAGGTGGCAAAGTTTGTTTGGTGGGAATGGGACATTCTGAAATGACTGTGCCACTCACACCAGCTGCTGCAAGGGAAGTTGATGTTGTTGGCATTTTCCGCTATAAGAATACATGGCCTCTTTGCCTTGAGTTTTTAAGGAGTGGCAAAATTGATGTAAAACCGCTTATAACTCATAGGTTTGGATTCTCACAAAAGGAAGTGGAAGAAGCCTTTGAAACAAGTGCTCGTGGTGGTAATGCTATTAAGGTCATGTTCAATCTTTAG 1089 0.4307 MGKGGMSIDDHVEQHNMAAWLVGLNTLKIQPFILPALGPHDVRIRMKAVGICGSDVHYLKTMRCADFIVKEPMVIGHECAGIIEEIGSEVKNLVSGDRVAIEPGISCWRCDHCKLGRYNLCPDMKFFATPPVHGSLANQIVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLVMGAGPIGLVTMLSARAFGAPRIVVVDVDDHRLSVAKSLGADDIVKVSTNIQDVVEEVKQIHNVMGAGIDVTFDCAGFNKTMTTALTATQPGGKVCLVGMGHSEMTVPLTPAAAREVDVVGIFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05560 362 SMART PKS_ER_names_mod 23 360 IPR020843 GO:0016491
Vivi2g05560 362 FunFam Sorbitol dehydrogenase 167 307 - -
Vivi2g05560 362 CDD sorbitol_DH 18 361 IPR045306 GO:0016616
Vivi2g05560 362 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 76 90 IPR002328 GO:0008270|GO:0016491
Vivi2g05560 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 326 IPR036291 -
Vivi2g05560 362 Gene3D - 167 307 - -
Vivi2g05560 362 Gene3D - 27 348 - -
Vivi2g05560 362 Pfam Alcohol dehydrogenase GroES-like domain 39 150 IPR013154 -
Vivi2g05560 362 SUPERFAMILY GroES-like 17 188 IPR011032 -
Vivi2g05560 362 PANTHER SORBITOL DEHYDROGENASE 15 362 - -
Vivi2g05560 362 Pfam Zinc-binding dehydrogenase 190 320 IPR013149 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05560 29 295 Monolignol Biosynthesis Gene Families AT4G37980 27.698 2.44e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05560 K00008 - gmx:100820630 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05560 2 182397825 182400844 Vivi2g05560 2 182397825 182400844 ECH