Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05559 ATGGATTTCGACGGTGGTAACAAGCGCGTTTATAACCGTCTCGGTGGTCCGGCCGGCGGCGACACAAAGAATCAGAAAGTGTGTTATAAATGGCAAGCGGGGAACTGTAACCGTTATCCGTGTCCGTTTCTGCATAGTGAGCTGCCTACTTCCAATGGGAATGGTGCTCCCTCGAAGCGGCCTTATGCTGAAAATTCTGGTTTCTCGGGTAACCGGCGTGGCGGTGGGTCGAGTTTTAATACGTGGGGGCCGGGGCGTGGTGGTGGACGTGGTCGCGGTGGTGGAAGGGGTAGTGTAGGAGGAGGTGGGAGGGGAGTTGTTGTGAATGTTGAGAGAGTTTGTACTTATTGGATTCAAGGGACTTGTGATTATGGTGATAGGTGTAAGTTTCTTCACTCTTGGAGTGTAGGGGACGGGTTTTCTTTATTGACTCAGCTTGAAGGACATAAAAAGGTTGTGAGTGGAATTGCTATGCCCTCTGGTTCGGATAAGCTTTATACTGGAAGTACTGATGAGACCGTAAGGGTTTGGGACTGCCAGTCTGGACAGTGTATAGCTGTAATCAATCTTGGTGGTGAAGTTGGTTGTATGATCAGTGAAGGTCCCTGGCTTTTTGTTGGCATACCCAATTTTGTTAAGGCTTGGAACACACAAAATTCAATGGAACTAAGTCTAGATGGCCCAGTCGGTCAAGTTTATGCACTTGTTGTGATTAATGATATGCTCTTTGCTGGTACGCAGGATGGAGCTATATTGGTATGGAAGTTTAATGTAGCTGCCAACCGTTTCGAGCCAGCTGCATCTCTTAAAGGTCATTCCCGTGGTGTTGTTTCATTAGTTGTTGGAGCTAATAGACTTTATTCTGGTTCAATGGACAATACAATTAGAGTCTGGAATCTTGAGACCTTGCAGTGTATACAGACACTAACAGGGCACACATCTGTTGTGATGTCTGTCCTTTGCTGGGATCAGTTCCTTATATCTTGTTCATTAGACAAAACAGTGAAGGTATGGTTTGCCACAGAAAGTGGAAATTTGGAAGTGACATATACTCACACTGAAGAACATGGTATAGTCACCCTCTGTGGGATGCATGATTCACAAGGAAAGCCCATATTACTGTGCTCTTGCAATGATAACACTGTTCGCCTCTATGATCTGCCATCTTTTGCAGAGAGAGGTAAGATATTCAACAAACAAGAAGTGCGGGCAATTCAAACTGGTCCTGGTAGCATATTCTTCACCGGTGATGGAACCGGCCAAGTGAGAGTGTGGAATTGGATAGCGGAACCAGCCACAGTCACGGCCAATAACATCAAATAA 1323 0.4596 MDFDGGNKRVYNRLGGPAGGDTKNQKVCYKWQAGNCNRYPCPFLHSELPTSNGNGAPSKRPYAENSGFSGNRRGGGSSFNTWGPGRGGGRGRGGGRGSVGGGGRGVVVNVERVCTYWIQGTCDYGDRCKFLHSWSVGDGFSLLTQLEGHKKVVSGIAMPSGSDKLYTGSTDETVRVWDCQSGQCIAVINLGGEVGCMISEGPWLFVGIPNFVKAWNTQNSMELSLDGPVGQVYALVVINDMLFAGTQDGAILVWKFNVAANRFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCIQTLTGHTSVVMSVLCWDQFLISCSLDKTVKVWFATESGNLEVTYTHTEEHGIVTLCGMHDSQGKPILLCSCNDNTVRLYDLPSFAERGKIFNKQEVRAIQTGPGSIFFTGDGTGQVRVWNWIAEPATVTANNIK 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05559 440 SUPERFAMILY CCCH zinc finger 111 133 IPR036855 GO:0046872
Vivi2g05559 440 ProSiteProfiles Zinc finger C3H1-type profile. 22 48 IPR000571 GO:0046872
Vivi2g05559 440 MobiDBLite consensus disorder prediction 52 99 - -
Vivi2g05559 440 FunFam Zinc finger CCCH domain-containing protein 48 134 224 - -
Vivi2g05559 440 Gene3D - 124 284 IPR015943 GO:0005515
Vivi2g05559 440 Pfam WD domain, G-beta repeat 304 338 IPR001680 GO:0005515
Vivi2g05559 440 Pfam WD domain, G-beta repeat 265 299 IPR001680 GO:0005515
Vivi2g05559 440 Pfam WD domain, G-beta repeat 142 178 IPR001680 GO:0005515
Vivi2g05559 440 PANTHER - 112 433 IPR044715 -
Vivi2g05559 440 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 178 - -
Vivi2g05559 440 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Vivi2g05559 440 PRINTS G protein beta WD-40 repeat signature 165 179 IPR020472 -
Vivi2g05559 440 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Vivi2g05559 440 ProSiteProfiles Zinc finger C3H1-type profile. 113 135 IPR000571 GO:0046872
Vivi2g05559 440 SMART c3hfinal6 23 47 IPR000571 GO:0046872
Vivi2g05559 440 SMART c3hfinal6 109 134 IPR000571 GO:0046872
Vivi2g05559 440 Gene3D - 285 437 IPR015943 GO:0005515
Vivi2g05559 440 SMART WD40_4 218 255 IPR001680 GO:0005515
Vivi2g05559 440 SMART WD40_4 389 426 IPR001680 GO:0005515
Vivi2g05559 440 SMART WD40_4 343 386 IPR001680 GO:0005515
Vivi2g05559 440 SMART WD40_4 302 339 IPR001680 GO:0005515
Vivi2g05559 440 SMART WD40_4 139 178 IPR001680 GO:0005515
Vivi2g05559 440 SMART WD40_4 262 299 IPR001680 GO:0005515
Vivi2g05559 440 Pfam Zinc finger domain 114 132 - -
Vivi2g05559 440 FunFam Zinc finger CCCH domain-containing protein 48 226 434 - -
Vivi2g05559 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 308 IPR001680 GO:0005515
Vivi2g05559 440 ProSitePatterns Trp-Asp (WD) repeats signature. 286 300 IPR019775 -
Vivi2g05559 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 187 IPR001680 GO:0005515
Vivi2g05559 440 SUPERFAMILY WD40 repeat-like 132 428 IPR036322 GO:0005515
Vivi2g05559 440 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05559 Vivi-Chr2 182389507 182394995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05559 241 426 Miscellaneous Gene Families AT5G08390 27.551 1.37e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi2g05559 WD40 0.00054 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05559 - - vvo:131653186 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05559 2 182389507 182394995 Vivi2g05559 2 182389507 182394995 ECH