Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05557 ATGGGAGTTCTGTATGCTCTAGAGCCAATTTTTACTGTTATTTTTGTAATAAACATGAACATAGTGTGGGAGAAAGTTATGGCAGCACTAAGAGCTCAGATCTTTGGAAGACTATTGATTCAGAAGGTTGAGTTTTTTGACAAATACAAGGTAGGTGAAATCACTAGTTTGTTGACGTCTGATTTGGGTTCTCTTAAAAACATCGTTGGTGAGAATGTTTCAAGGGATCGCGGATTCAGGGCATTATCTGAGGTCACTGGGACAATAATCATACTTTTTACTTTATCCCCTCAACTGGCTCCAATTCTGGGTATTCTGATGATAGCAGTTTCCATTTCAATTGCTATCTACAAGAGATCAACTTTGCCTGTTTTTCAAGCACATGGGTTGGCTCAAGCTTCTATATCGGATTGTATAACTGAAACATTTTCTGCTATTCGAACAGTTCGATCCTTTAGTGGAGAAAAGCGGCAAATGTTTATGTTTGCTAACCAGGTTCTATCCTTCGAATCGAGTGGTATAAAGCTTGGAACTTTCAAATCTATTAATGAATCCCTGACTAGAGTTGCTGTTTATATTTCTTTGACTGCGCTATATTGTCTCGGAGGAAGCAAAGTTAAGGCGGGTCAACTCTCTGTTGGAACTATGGCATCTTTTATTGGATATACTTTCACTTTAACATTTGCGGTTCAAGGATTGGTTAATACATTTGGAGATCTTCGTGCAAGTTTTGCGGCTGTTGAGAGGATCAACTCTGTTCTATCTGGAGTTCAAGTTGATGATGCCCTTGCCTATGGCTTAGAAAGAGAACTGAAACAAAAGGCAGGGAACGATGAGAACTATAAACTGTTCTTCTCTAATAGTTCTGATGAGAAAAACCAAAACAGCCATTTGCATTACATGTCGGCATTAAAAACATCAAGCAACGTGTTTAGTTTAGCTTGGTCTGGAGATATTTGTCTTGAAGATGTGTATTTCTCTTACCCTTTAAGGCCAGATGTGGAAATTTTACGCGGATTAAATTTAAGACTAAAATGTGGAACTGTAACTGCACTGGTGGGCGCTAGTGGTGCAGGAAAAAGTACGATCGTACAGCTATTGTCTCGTTTTTATGAGCCAACAAGAGGTTGTATAACAGTTGGTGGAGAGGATGTTCGAACATTTGACAAAAGTGAATGGGCTCGGGTTGTCTCTATCGTAAATCAAGAACCTGTTTTGTTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGACTTCCTGATGACGATGTTTCTAAAGACGATGTGATTAAGGCAGCAAAAGCAGCAAATGCTCATGACTTCATAATTTCACTTCCTCAGGGCTATGATACACTTGTTGGTGAGCGCGGAGGCCTACTGAGCGGGGGACAGAGGCAGAGAATTGCCATTGCCCGAGCTCTCCTGAAGAATGCTCCCATCCTAATACTTGATGAGGCTACAAGTGCTCTGGATACCGTCAGTGAACGCTTAGTCCAAGATGCTCTCAACCATTTGATGAAGGGGAGGACAACATTAGTCATAGCTCACAGGTTAAGCACAGTTCAAAATGCTTATCAAATTGCACTCTGTTCCGATGGGAAGGTTGCAGAACTAGGCACTCATTTTGAGCTATTAGCTAAGAAGGGCCAATATGCTTCACTAGTTGGCACTCAAAGGCTTGCTTTTGAATAA 1692 0.4072 MGVLYALEPIFTVIFVINMNIVWEKVMAALRAQIFGRLLIQKVEFFDKYKVGEITSLLTSDLGSLKNIVGENVSRDRGFRALSEVTGTIIILFTLSPQLAPILGILMIAVSISIAIYKRSTLPVFQAHGLAQASISDCITETFSAIRTVRSFSGEKRQMFMFANQVLSFESSGIKLGTFKSINESLTRVAVYISLTALYCLGGSKVKAGQLSVGTMASFIGYTFTLTFAVQGLVNTFGDLRASFAAVERINSVLSGVQVDDALAYGLERELKQKAGNDENYKLFFSNSSDEKNQNSHLHYMSALKTSSNVFSLAWSGDICLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGASGAGKSTIVQLLSRFYEPTRGCITVGGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDDDVSKDDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDTVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIALCSDGKVAELGTHFELLAKKGQYASLVGTQRLAFE 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05557 563 CDD ABC_MTABC3_MDL1_MDL2 319 558 - -
Vivi2g05557 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 558 IPR027417 -
Vivi2g05557 563 Pfam ABC transporter transmembrane region 2 229 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g05557 563 SMART AAA_5 346 520 IPR003593 GO:0016887
Vivi2g05557 563 CDD ABC_6TM_TAP_ABCB8_10_like 1 250 - -
Vivi2g05557 563 ProSitePatterns ABC transporters family signature. 460 474 IPR017871 GO:0005524|GO:0016887
Vivi2g05557 563 Gene3D ABC transporter type 1, transmembrane domain 1 258 IPR036640 GO:0005524|GO:0016020
Vivi2g05557 563 Pfam ABC transporter 337 488 IPR003439 GO:0005524
Vivi2g05557 563 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 317 561 - -
Vivi2g05557 563 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 3 561 IPR039421 -
Vivi2g05557 563 Gene3D - 317 560 IPR027417 -
Vivi2g05557 563 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 319 557 IPR003439 GO:0005524
Vivi2g05557 563 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 242 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g05557 563 SUPERFAMILY ABC transporter transmembrane region 1 250 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05557 Vivi-Chr2 182360299 182367109 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05557 316 563 Calmodulin-binding Proteins AT2G36910 54.183 5.23e-76 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05557 K05657 - gmx:100791034 986.867