Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05553 ATGTTTAACATCTCTTCAAATTCACACACCATTTCCTCAAAAGCTTTCAACGGGGAACAGCGGTTAGCCGCGAGTTGTCCGAAGAAGCCTGCAGGGAGGAAGATATTCAAGGAAACCCGCCACCCGGTGTATAGAGGTGTGAGGAAGAGGAATTTAGACAAGTGGGTTTGTGAAATGAGGGAGCCCAACAAGAAGACTAGAATTTGGCTAGGGACTTTTCCAACGGCCGAGATGGCGGCCCGAGCCCACGATGTTGCGGCAATGGCATTGAGAGGCCGCTACGCCTGTCTCAATTTCGCAGACTCGGTGTGGCGACTCCCTATTCCTGCAACCTCTGATACAAAAGATATACAAAAAGCGGCTACAGAAGCGGCTGAGGCTTTCAGACCAGGCAAGATTTTAATGACTAACGACGTCGACACAGAGGAGGTGAGTGTGTTTTGTGTGGGAGTGGAAGAAGAGGAGGAAGTGTTGGATATGACAGAGTTGTGGAGGAATATGGTGATGATGTCCCCTACACGTAGTTTTGAGTATGATGAGTATGAACATATTGATGTACAAGAATATCAAGATGAAGAGGTATCACTATGGAGTTTTTAA 600 0.4717 MFNISSNSHTISSKAFNGEQRLAASCPKKPAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPIPATSDTKDIQKAATEAAEAFRPGKILMTNDVDTEEVSVFCVGVEEEEEVLDMTELWRNMVMMSPTRSFEYDEYEHIDVQEYQDEEVSLWSF 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05553 199 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Vivi2g05553 199 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Vivi2g05553 199 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Vivi2g05553 199 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Vivi2g05553 199 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Vivi2g05553 199 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Vivi2g05553 199 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Vivi2g05553 199 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Vivi2g05553 199 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 199 IPR045277 GO:0003700
Vivi2g05553 199 SUPERFAMILY DNA-binding domain 43 102 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05553 Vivi-Chr2 182213195 182214190 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05553 21 199 AP2-EREBP Transcription Factor Family AT4G25470 57.513 2.75e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g05553 AP2 6.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05553 - K09286 vvo:131653181 259.996