Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05550 ATGTTTTATACTAGTGACCCCATTTTATCATCAGCTTCATCTTCCTACAACACCTCATCGCCAGAATGGGAGATGCAGTTAGCAGCGAGTTGCCCGAAGAAGCCAGCAGGAAGGAAGATATTCAAGGAAACTCGCCACCCGGTGTATAGGGGCGTGAGGAAGAGGAACTTAGATAAATGGGTGTGCGAACTGAGAGAGCCCAACAAGAAGACTAGAATTTGGCTAGGAACTTTTCCAACGGCCGAGATGGCAGCCCGAGCCCACGATGTTGCTGCGATGGCACTGAGAGGCCGCTATGCCTGTCTCAATTTTGCGGACTCGGTGTGGCGACTCCCTATTCCTGCAACCTCTGATACAAAAGATATACAAAAAGCGGCTACAGAAGCTGCCGAGGCTTTCAGACCAGATAAAACTTTAGTGAATAAGAACTTTGACATCGTTGGACCGGTCATCATTGTACCAGACTTTGACATCGTTGTACCGGTTATCATTGTACCGGATTTTGACATTGTTGTACCGGTTATCATTGTACCGGTCATGGCGACAGAGAAGTTGAATATGTTTTGTATAGAAGAGGAAGAAGAAGAAGAAGGAGTGATGAACATGCCTGATATATGGAGGAATATGGCTCTAATGTCCCCTACACATAGTTTTGGGGATCATGAGTATGAACATATTGATGTACAAGATTTTCAAGATGATGATGAGGATTTTAAAAAACCTGTTACAGTGATTTGGGCTGTGACTGCAATTGGAGTTCTTTGGTCAAATTTTGCAGTAATATCAAGGATCATGATCGTTACCATGACTGCAAACACGCCGATGTTTGTTTTCATTTTGGTAACTTTAAGGTGCCCACATTTCTTTACGAGTGTTATAGTGTGTGATACACAGAAAAGTTCATCAATACTAAAAGTGGTAGTGGTAATGGTTTTATCTATCAAATTGTATTGCATTTTTTCTTTATCTTCTTTGCCTATAAATTTCTAG 990 0.4202 MFYTSDPILSSASSSYNTSSPEWEMQLAASCPKKPAGRKIFKETRHPVYRGVRKRNLDKWVCELREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPIPATSDTKDIQKAATEAAEAFRPDKTLVNKNFDIVGPVIIVPDFDIVVPVIIVPDFDIVVPVIIVPVMATEKLNMFCIEEEEEEEGVMNMPDIWRNMALMSPTHSFGDHEYEHIDVQDFQDDDEDFKKPVTVIWAVTAIGVLWSNFAVISRIMIVTMTANTPMFVFILVTLRCPHFFTSVIVCDTQKSSSILKVVVVMVLSIKLYCIFSLSSLPINF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05550 329 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Vivi2g05550 329 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Vivi2g05550 329 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Vivi2g05550 329 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 234 IPR045277 GO:0003700
Vivi2g05550 329 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Vivi2g05550 329 Pfam AP2 domain 47 97 IPR001471 GO:0003700|GO:0006355
Vivi2g05550 329 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Vivi2g05550 329 FunFam Ethylene-responsive transcription factor 2 47 106 - -
Vivi2g05550 329 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Vivi2g05550 329 SUPERFAMILY DNA-binding domain 48 107 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05550 Vivi-Chr2 182132999 182138073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05550 18 134 AP2-EREBP Transcription Factor Family AT4G25470 74.359 2.31e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g05550 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05550 - K09286 vvo:131653181 570.852