Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05549 ATGTTTTATACTAGTGACCCCATTTTATCATCAGCTTCATCTTCCTACAACACCTCATCACCGGATTGGGAGATGCGGTTAGCAGCAAGTTGCCCGAAGAAGCGAGCAGGAAGAAAGATATTCAAGGAAACTCGCCACCCAGTGTATAGGGGAGTGAGGAAGAGAAACTTAGATAAATGGGTGTGCGAAATGAGAGAGCCCAACAAGAAGACTAGAATTTGGCTAGGAACTTTTCCAACTGCCGAGATGGCAGCCCGAGCCCACGATGTTACTGCGATGGCACTGAGAGGCCGCTATGCCTGTCTCAACTTTGCAGACTCGGTGTGGCGACTCCCTATTCCTACAACCTCTGATACAAAAGATATACAAAAAGCGGCTACAGAAGCTGCCGAGGCTTTCAGACCAGACAAAACTTTATTGATTAAGAACTTTGACATTGTTGTACCGATCATCATTATACCAGACTTTGACATCGTTGTACCAGTCATCATTGTACCGGACTTTGACATCGTTGTACCGGTTATCATTGTACCGGTCATCGCGACAGAGAAGTTGAATATGTTTTGTATAGAAGAGGAAGAAGAAGAAGGAGTGATGAACATGCCAGATATGTGGAGGAATATGGCTCTAATGTCCCCTACACATAGTTTTGGGGATCATGAGTATGAACATATTGATGTACAAGATTTTCAAGATGATGATGAGGATTTTAAAAAACCCGTTACAATGATTTGGGCTGTGACTGCAATTGGAGTTCATTCGTCGCATTTTGCTATAATATCAAGGATCATGATCGTTACTATGTTTTCTATTTGGTAA 819 0.4274 MFYTSDPILSSASSSYNTSSPDWEMRLAASCPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVTAMALRGRYACLNFADSVWRLPIPTTSDTKDIQKAATEAAEAFRPDKTLLIKNFDIVVPIIIIPDFDIVVPVIIVPDFDIVVPVIIVPVIATEKLNMFCIEEEEEEGVMNMPDMWRNMALMSPTHSFGDHEYEHIDVQDFQDDDEDFKKPVTMIWAVTAIGVHSSHFAIISRIMIVTMFSIW 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05549 272 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Vivi2g05549 272 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Vivi2g05549 272 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Vivi2g05549 272 MobiDBLite consensus disorder prediction 1 20 - -
Vivi2g05549 272 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Vivi2g05549 272 FunFam Ethylene-responsive transcription factor 2 47 106 - -
Vivi2g05549 272 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Vivi2g05549 272 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 233 IPR045277 GO:0003700
Vivi2g05549 272 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Vivi2g05549 272 SUPERFAMILY DNA-binding domain 48 107 IPR016177 GO:0003677
Vivi2g05549 272 Pfam AP2 domain 47 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05549 Vivi-Chr2 182072146 182074100 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05549 2 138 AP2-EREBP Transcription Factor Family AT5G51990 67.143 3.61e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi2g05549 AP2 5.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05549 - - vvo:131647601 472.241