Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05548 ATGTTTACAACTGACAGCTCTTCCTCCAGCACTTCATTGCCAAATTTAGATGTCTCTTATGGGACGTCCTTTTTCAACGAGGAGGGGCGGTTAGCCGAGAGTACCCCGAAGAAGCGTTCAGGGAGGAAGAAGTTCCAGGAAACTCGCCACCCGGTGTATAGAGGTGTTAGGAAGAGAAACAATGACAAATGGGTGTGTGAAATGAGGGAACCTAACAAGAAGAGTAAGATCTGGCTAGGCACGTTTCCAACGGCCGAGATGGCAGCCCGTGCCCACGATGTTGCTGCTATGGCATTAAGGGGCCGCTATGCATGTCTCAATTTTGCAGACTCGGCATGGCGGCTTCCTAAACCTGCTACCACTGAAGCAAAAGATATACAAAAGGCGGCCGCAGAAGCGGCCGAAGCTTTCAGGCCAGACCAAACTTTAATGACCAATGACATTGAGGCTGTAGCTGACTCCGCCACAGAGGAGCTAGGTAAGCTTTGTATGGAAGAGAAAGAAGAAGAAGCTATGGACATGCCAGACATGTGGAGGAATATGGCGCTAATGTCCCCTACACATAGCTTTGGGTATAATGAGTATGAAGATACTAATGTACAAGATTTTCAAGATGAAGATGAAGAGGTATCACTATGGACTTATTAA 648 0.4738 MFTTDSSSSSTSLPNLDVSYGTSFFNEEGRLAESTPKKRSGRKKFQETRHPVYRGVRKRNNDKWVCEMREPNKKSKIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSAWRLPKPATTEAKDIQKAAAEAAEAFRPDQTLMTNDIEAVADSATEELGKLCMEEKEEEAMDMPDMWRNMALMSPTHSFGYNEYEDTNVQDFQDEDEEVSLWTY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05548 215 MobiDBLite consensus disorder prediction 1 20 - -
Vivi2g05548 215 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Vivi2g05548 215 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Vivi2g05548 215 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Vivi2g05548 215 MobiDBLite consensus disorder prediction 29 49 - -
Vivi2g05548 215 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Vivi2g05548 215 MobiDBLite consensus disorder prediction 31 49 - -
Vivi2g05548 215 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Vivi2g05548 215 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Vivi2g05548 215 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 215 IPR045277 GO:0003700
Vivi2g05548 215 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677
Vivi2g05548 215 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Vivi2g05548 215 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05548 Vivi-Chr2 182030668 182031398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05548 30 215 AP2-EREBP Transcription Factor Family AT4G25470 54.040 2.40e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi2g05548 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05548 - - mtr:25497250 287.345