Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05547 ATGTTTACAACTAACAACTCTTCCTCCAGCATGTCATTACCAAATCTAGATGTCTCTCATGACATGTCAGTTTTCGACGAAGAAGTGCGGTTAGCTGCGAGTACACCGAAGAAGCGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCGGTGTATAGGGGTGTGAGGAAGAGAAACTTAGATAAATGGGTCTGTGAAATGAGAGAGCCTAATAAGAAAACTAAGATTTGGCTAGGAACATTTCCAACCGCTGAGATGGCTGCCCGAGCACACGATGTTGCAGCAATGGCTTTGAGGGGCCGCTACGCCTGTCTCAATTTCGCAGACTCAACGTGGCGGCTCCCTAAGCCAGCCAGTACTGAGGCAAAAGATATACAAAAGGCGGCTGCAGAAGCTGCCGAGGCTTTCAGACCAGACCAGATTTTACCGGTCAATAATGTTGATGGGACTTTAACGGTCAATGACAATGACGCGGCGGTAGCTCCCGCTGCCACCGAAGAGCAGAATATGTTTTCTATGGAAGTGGAAGAAGAGGGAGCGATGAACATGCCAGATATGTGGAGGAATATGGCATTAATGTCCCCTACACATAGCTTTGAGTATGAGTATGAAGATATTCATGTACAAGACTTTCAAGATGAAGATGAAGAGGTATCACTATGGACTTATTAA 675 0.4667 MFTTNNSSSSMSLPNLDVSHDMSVFDEEVRLAASTPKKRAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSTWRLPKPASTEAKDIQKAAAEAAEAFRPDQILPVNNVDGTLTVNDNDAAVAPAATEEQNMFSMEVEEEGAMNMPDMWRNMALMSPTHSFEYEYEDIHVQDFQDEDEEVSLWTY 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05547 224 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Vivi2g05547 224 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Vivi2g05547 224 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 224 IPR045277 GO:0003700
Vivi2g05547 224 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Vivi2g05547 224 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Vivi2g05547 224 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Vivi2g05547 224 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Vivi2g05547 224 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677
Vivi2g05547 224 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Vivi2g05547 224 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05547 Vivi-Chr2 181943576 181946643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05547 26 224 AP2-EREBP Transcription Factor Family AT4G25470 53.960 8.31e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g05547 AP2 2.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05547 - - psat:127115660 302.753