Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05546 ATGTTTCCAACTGATAAGTCTTCTACTTCACATCCAAGTTCCTCAAAAGCTTCCACTTCATCAAACCCGCCATTGCCTAATTTAGAGATCCCTCGTGACATGTCAGTTTTCAGTGAGGAACTTCGACTAGCCGAGAGTACACCGAAGAAGCGAGCAGGGAGGAAGAAGTTCAAGGAGACTCGTCACCCGGTGTTTAGGGGTGTGAGGAGGAGGAATTTAGATAAGTGGGTGTGTGAAATGAGGGAGCCTAACAAGAAAACTAAAATTTGGTTAGGAACCTATCCAACCGCCGAAATGGCAGCTCGAGCCCATGATGTCGCGGCATTGGCATTGAGAGGTCGCAGCGCGTGTCTCAACTTTGCAGACTCGGCGTGGCGACTTCCTGTTCCTGCTACTACCGCGACTAAAGATATACAACATGCGGCTGCAGAAGCCGCCGAGGCTTTTAGACCAGACAAGACTTTACTAACTAATGACATTAACATTGACACTGACACGGCTGTAGCCGCAGTCACAGAGGAGCAACTTATGTTTGGTATGGAAGAAGAAGAGGAGGAAGAGGTGAACATTCCAGAGTCCTTGAGAAATATGGCGCTATTATCCCCTACACATAGCTTGGAGAATGAGTTCCATTATAATGATGCAGAACTTCAAGATGTTGAGGTGTCACTATGGAGCTTTTCCCTTTAA 690 0.4696 MFPTDKSSTSHPSSSKASTSSNPPLPNLEIPRDMSVFSEELRLAESTPKKRAGRKKFKETRHPVFRGVRRRNLDKWVCEMREPNKKTKIWLGTYPTAEMAARAHDVAALALRGRSACLNFADSAWRLPVPATTATKDIQHAAAEAAEAFRPDKTLLTNDINIDTDTAVAAVTEEQLMFGMEEEEEEEVNIPESLRNMALLSPTHSLENEFHYNDAELQDVEVSLWSFSL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05546 229 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Vivi2g05546 229 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Vivi2g05546 229 MobiDBLite consensus disorder prediction 1 26 - -
Vivi2g05546 229 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Vivi2g05546 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 226 IPR045277 GO:0003700
Vivi2g05546 229 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Vivi2g05546 229 MobiDBLite consensus disorder prediction 1 32 - -
Vivi2g05546 229 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Vivi2g05546 229 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vivi2g05546 229 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vivi2g05546 229 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Vivi2g05546 229 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05546 Vivi-Chr2 181873788 181874512 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05546 42 227 AP2-EREBP Transcription Factor Family AT4G25470 55.497 5.00e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g05546 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05546 - - psat:127130221 320.087