Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi2g05546 | ATGTTTCCAACTGATAAGTCTTCTACTTCACATCCAAGTTCCTCAAAAGCTTCCACTTCATCAAACCCGCCATTGCCTAATTTAGAGATCCCTCGTGACATGTCAGTTTTCAGTGAGGAACTTCGACTAGCCGAGAGTACACCGAAGAAGCGAGCAGGGAGGAAGAAGTTCAAGGAGACTCGTCACCCGGTGTTTAGGGGTGTGAGGAGGAGGAATTTAGATAAGTGGGTGTGTGAAATGAGGGAGCCTAACAAGAAAACTAAAATTTGGTTAGGAACCTATCCAACCGCCGAAATGGCAGCTCGAGCCCATGATGTCGCGGCATTGGCATTGAGAGGTCGCAGCGCGTGTCTCAACTTTGCAGACTCGGCGTGGCGACTTCCTGTTCCTGCTACTACCGCGACTAAAGATATACAACATGCGGCTGCAGAAGCCGCCGAGGCTTTTAGACCAGACAAGACTTTACTAACTAATGACATTAACATTGACACTGACACGGCTGTAGCCGCAGTCACAGAGGAGCAACTTATGTTTGGTATGGAAGAAGAAGAGGAGGAAGAGGTGAACATTCCAGAGTCCTTGAGAAATATGGCGCTATTATCCCCTACACATAGCTTGGAGAATGAGTTCCATTATAATGATGCAGAACTTCAAGATGTTGAGGTGTCACTATGGAGCTTTTCCCTTTAA | 690 | 0.4696 | MFPTDKSSTSHPSSSKASTSSNPPLPNLEIPRDMSVFSEELRLAESTPKKRAGRKKFKETRHPVFRGVRRRNLDKWVCEMREPNKKTKIWLGTYPTAEMAARAHDVAALALRGRSACLNFADSAWRLPVPATTATKDIQHAAAEAAEAFRPDKTLLTNDINIDTDTAVAAVTEEQLMFGMEEEEEEEVNIPESLRNMALLSPTHSLENEFHYNDAELQDVEVSLWSFSL | 229 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi2g05546 | 229 | Gene3D | AP2/ERF domain | 64 | 122 | IPR036955 | GO:0003700|GO:0006355 | |
Vivi2g05546 | 229 | ProSiteProfiles | AP2/ERF domain profile. | 64 | 121 | IPR001471 | GO:0003700|GO:0006355 | |
Vivi2g05546 | 229 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Vivi2g05546 | 229 | SUPERFAMILY | DNA-binding domain | 64 | 123 | IPR016177 | GO:0003677 | |
Vivi2g05546 | 229 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 7 | 226 | IPR045277 | GO:0003700 | |
Vivi2g05546 | 229 | SMART | rav1_2 | 64 | 127 | IPR001471 | GO:0003700|GO:0006355 | |
Vivi2g05546 | 229 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Vivi2g05546 | 229 | Pfam | AP2 domain | 63 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Vivi2g05546 | 229 | PRINTS | Ethylene responsive element binding protein signature | 87 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Vivi2g05546 | 229 | PRINTS | Ethylene responsive element binding protein signature | 65 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Vivi2g05546 | 229 | FunFam | Ethylene-responsive transcription factor 2 | 63 | 122 | - | - | |
Vivi2g05546 | 229 | CDD | AP2 | 65 | 123 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi2g05546 | Vivi-Chr2 | 181873788 | 181874512 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi2g05546 | 42 | 227 | AP2-EREBP Transcription Factor Family | AT4G25470 | 55.497 | 5.00e-66 | 201 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Vivi2g05546 | AP2 | 1.5e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi2g05546 | - | - | psat:127130221 | 320.087 |