Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05545 ATGTTTCCAACTGATAAGTCTTCCACTTCACATCCAAGTTCCTCAAAAGCTTCCACTTCCTCAAACACGCCATTGCCTAATTTAGAGATCCCTCATTACATGTCAGTTTTCAATGAGGAACTTCGACTAGCCGAGAGTACGCCGAAGAATCGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGTCACCCGGTGTTTAGGGGTGTGAGGAGGAGGAATTTAGATAAGTGGGTGTGTGAAATGAGGGAGCCTAACAAGAAAACTAAAATTTGGTTAGGGACCTATCCAACCGTCGAAATGGCAGCTCGAGCCCATGATGTTGCGGCATTAGCATCGAGAGGTCGCAGCGCGTGTCTCAACTTTGCAGACTCAGCGTGGCGACTTCCTGTTCCTGTCACTACCGCGACTAAAGATATACAGAAGGCGGCTGCAGAAGCCGTCGAGGCTTTTAGACCAGACAAGACTTTATTAACTAATGACATTAACATTGACACTGACACGGCTGTAGCCGCAGCCACAGAGGAGCAACTTATGTTTGGTATGGAAGAAGAAGAAGAAGAGGAAGAGGTGAACATTCCAGAGTCCTTGAGAAATATGGCGCTATTATCCCCTACACATAGCTTGGAGAATGAGTTCCATTATAATGATGCAGAACTTCAAGATGTTGAGGTGTCACTATGGAGCTTTTCCCTTTAA 693 0.4618 MFPTDKSSTSHPSSSKASTSSNTPLPNLEIPHYMSVFNEELRLAESTPKNRAGRKKFKETRHPVFRGVRRRNLDKWVCEMREPNKKTKIWLGTYPTVEMAARAHDVAALASRGRSACLNFADSAWRLPVPVTTATKDIQKAAAEAVEAFRPDKTLLTNDINIDTDTAVAAATEEQLMFGMEEEEEEEEVNIPESLRNMALLSPTHSLENEFHYNDAELQDVEVSLWSFSL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05545 230 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Vivi2g05545 230 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Vivi2g05545 230 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Vivi2g05545 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 227 IPR045277 GO:0003700
Vivi2g05545 230 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Vivi2g05545 230 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Vivi2g05545 230 MobiDBLite consensus disorder prediction 1 29 - -
Vivi2g05545 230 MobiDBLite consensus disorder prediction 1 28 - -
Vivi2g05545 230 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Vivi2g05545 230 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vivi2g05545 230 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05545 Vivi-Chr2 181867743 181868435 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05545 42 228 AP2-EREBP Transcription Factor Family AT4G25470 53.608 1.86e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g05545 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05545 - - psat:127130221 322.398