LGRPv2

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g05545	ATGTTTCCAACTGATAAGTCTTCCACTTCACATCCAAGTTCCTCAAAAGCTTCCACTTCCTCAAACACGCCATTGCCTAATTTAGAGATCCCTCATTACATGTCAGTTTTCAATGAGGAACTTCGACTAGCCGAGAGTACGCCGAAGAATCGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGTCACCCGGTGTTTAGGGGTGTGAGGAGGAGGAATTTAGATAAGTGGGTGTGTGAAATGAGGGAGCCTAACAAGAAAACTAAAATTTGGTTAGGGACCTATCCAACCGTCGAAATGGCAGCTCGAGCCCATGATGTTGCGGCATTAGCATCGAGAGGTCGCAGCGCGTGTCTCAACTTTGCAGACTCAGCGTGGCGACTTCCTGTTCCTGTCACTACCGCGACTAAAGATATACAGAAGGCGGCTGCAGAAGCCGTCGAGGCTTTTAGACCAGACAAGACTTTATTAACTAATGACATTAACATTGACACTGACACGGCTGTAGCCGCAGCCACAGAGGAGCAACTTATGTTTGGTATGGAAGAAGAAGAAGAAGAGGAAGAGGTGAACATTCCAGAGTCCTTGAGAAATATGGCGCTATTATCCCCTACACATAGCTTGGAGAATGAGTTCCATTATAATGATGCAGAACTTCAAGATGTTGAGGTGTCACTATGGAGCTTTTCCCTTTAA	693	0.4618	MFPTDKSSTSHPSSSKASTSSNTPLPNLEIPHYMSVFNEELRLAESTPKNRAGRKKFKETRHPVFRGVRRRNLDKWVCEMREPNKKTKIWLGTYPTVEMAARAHDVAALASRGRSACLNFADSAWRLPVPVTTATKDIQKAAAEAVEAFRPDKTLLTNDINIDTDTAVAAATEEQLMFGMEEEEEEEEVNIPESLRNMALLSPTHSLENEFHYNDAELQDVEVSLWSFSL	230

Showing 1 to 1 of 1 entries

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vivi2g05545	230	Pfam	AP2 domain	63	112	IPR001471	GO:0003700\|GO:0006355
Vivi2g05545	230	SUPERFAMILY	DNA-binding domain	64	123	IPR016177	GO:0003677
Vivi2g05545	230	Gene3D	AP2/ERF domain	64	122	IPR036955	GO:0003700\|GO:0006355
Vivi2g05545	230	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	7	227	IPR045277	GO:0003700
Vivi2g05545	230	SMART	rav1_2	64	127	IPR001471	GO:0003700\|GO:0006355
Vivi2g05545	230	ProSiteProfiles	AP2/ERF domain profile.	64	121	IPR001471	GO:0003700\|GO:0006355
Vivi2g05545	230	MobiDBLite	consensus disorder prediction	1	29	-	-
Vivi2g05545	230	MobiDBLite	consensus disorder prediction	1	28	-	-
Vivi2g05545	230	CDD	AP2	65	123	IPR001471	GO:0003700\|GO:0006355
Vivi2g05545	230	PRINTS	Ethylene responsive element binding protein signature	87	103	IPR001471	GO:0003700\|GO:0006355

Showing 1 to 10 of 11 entries

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g05545	Vivi-Chr2	181867743	181868435	Tandem

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g05545	42	228	AP2-EREBP Transcription Factor Family	AT4G25470	53.608	1.86e-62	192

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Vivi2g05545		AP2	1.5e-12	CL0081

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g05545	-		-	psat:127130221	322.398

Showing 1 to 1 of 1 entries