Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05544 ATGGATATGTTTCCAAGTAACAGCTCTTCGTCTTCTTCTATGTCATTGCAGAATTCAGAAGGCTATCAATGGATCCCTATTTCAGACGAGGAGGTTCGGTTAGCTGCGACCACCCCGAAGAAGCGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCATCCGGTGTATAGGGGTGTGAGGAGAAGAAACAATAATAAATGGGTGTGTGAAATGAGGGAGCCTAACAAGAAGACTAAAATTTGGTTAGGCACTTTTCCAACGGTCGAGATGGCTGCCCGAGCGCACGATGTTGCTGCACTGGCATTAAGGGGCCGATACGCCTGTCTCAATTTTGCAGACTCAACTTGGCGGCTCCCAAAACCAGCTACTACTCAAGCAAAAGATATACAAAAGGCAGCTATAGAAGCCGCCGAGGCTTTCAGACTAGATCAAACTTTGCCGACTAATAATGTTGACGAGACTTTAATGGTTAATGACGTCATTGACACGGTGGTAGCTGCGGCCACTCCAGAAGAGCAAAATTTGTTTTCTATGGAAGCGGAAGAAGAGAGAGTAGAACAGAATTTGTTTTCAATGGAAGTGGAAGAAGAGAGAGAAATGATGAACACGCCAGAGATGTGGAGGAATATGGCAATAATGTCTCCAACACATGATTTCGGGTATCAAGGTGAATATCAATATATTGATGTACAAGACTATCAAGATCAAGAGGTGTCACTATGGAGCTTTTAG 732 0.4467 MDMFPSNSSSSSSMSLQNSEGYQWIPISDEEVRLAATTPKKRAGRKKFKETRHPVYRGVRRRNNNKWVCEMREPNKKTKIWLGTFPTVEMAARAHDVAALALRGRYACLNFADSTWRLPKPATTQAKDIQKAAIEAAEAFRLDQTLPTNNVDETLMVNDVIDTVVAAATPEEQNLFSMEAEEERVEQNLFSMEVEEEREMMNTPEMWRNMAIMSPTHDFGYQGEYQYIDVQDYQDQEVSLWSF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05544 243 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Vivi2g05544 243 FunFam Ethylene-responsive transcription factor 2 54 113 - -
Vivi2g05544 243 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Vivi2g05544 243 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Vivi2g05544 243 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Vivi2g05544 243 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 243 IPR045277 GO:0003700
Vivi2g05544 243 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Vivi2g05544 243 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Vivi2g05544 243 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Vivi2g05544 243 SUPERFAMILY DNA-binding domain 55 114 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05544 Vivi-Chr2 181856825 181857637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05544 26 243 AP2-EREBP Transcription Factor Family AT5G51990 49.776 1.61e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g05544 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05544 - K09286 psat:127115660 380.178